Poeciliopsis prolifica (blackstripe livebearer): 129356193
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Entry
129356193 CDS
T09758
Symbol
prpf4
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129356193 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129356193 (prpf4)
Spliceosome [BR:
pprl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
129356193 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Ge1_WD40
WD_LRWD1
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
WD40_RFWD3
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
129356193
NCBI-ProteinID:
XP_054881766
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MSDEEDSAPAMKKSRVFYGSLEEKERQRITMEMASSAAAGSDALKAGIRAGNINISSGET
MEMEERVSERQLEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKRSRKDEERAKRSRDECLQTWYHEGPASLKEARLWLARYSLPRAMRR
LEAARALKEVSDATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLVTASWS
GLCKLWSVPDCALIRTLRGHNTNVGAVAFRPQAGVSLDQSDVSLASCAADGTVKLWNLES
DEPVXDIEGHSDRVSRVSWHPSGRFLGTTCYDRSWRLWDLELQEEIPQEGHSKGVHDIRF
LTXLLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGHHLATGSGDNTCKVW
ELRNRKCLYTVPAHQNLLSAVRFQRNHXHFLLTGAYDNTAKIWSHXGWMPLKTLAGHEGK
VMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggaagactctgctccggccatgaagaagagccgtgtgttctacggcagc
ctggaggagaaggagcgtcagcgcatcaccatggagatggccagtagcgctgccgcagga
agtgatgcgctgaaggcgggcatcagagcaggaaacatcaacatctcatcaggagagacc
atggagatggaggagcgtgtaagcgagcgccagctggaggcgctggccgagtttgagcgg
cggcggcgagcgcgacagatcaccgtctccaccgacgatgccgaggtgaaggccggcctg
cgggcgctgggagagccaatcacgctgtttggagaggggccagccgaccgccgagagagg
ctgcgcagcgttctgtctgttgtgggtccagacgccctgaagagatccaggaaggacgaa
gagagagccaagaggtcacgggacgagtgtctgcagacgtggtaccacgaaggccccgcc
tccctgaaggaagctcgcctctggttggccagatattctctgccacgggcgatgaggcgt
ctggaagctgcacgggctttgaaggaggtttccgatgcgacgaagacgatccgccagcag
gagctgcacaagtcactgaggaatctgaacaacttctgcagtcagattggagacgatcgg
ccaatcagtttctgccacttcagtccggactccaagatgctcgtcacggcgtcctggagt
ggcctgtgcaagctgtggtcggtcccggactgcgccctgatccggaccctgagaggacac
aacaccaacgtgggcgccgtggcgttccgcccgcaagccggcgtctctctggaccagtca
gacgtcagcctggcgtcctgcgccgccgacgggacggtgaagctgtggaacctggagagt
gacgagccagtgngggacattgagggtcacagtgatcgggtttccagagtttcctggcat
ccgtctggaagattcctgggaaccacctgctacgaccgctcctggcgtctctgggatctg
gagctgcaggaggaaatcccacaggaaggtcacagcaaaggagttcatgacatcagattc
ctgacgnngctccttgccgctacaggagggctcgatgccttcggcagggtgtgggacctg
aggacggggcgctgcgtggtttttctggaggggcacctgaaggagatctacagcgttcac
ttcagtcctaacggccatcacctggccacaggaagtggtgacaacacctgtaaggtgtgg
gagctgcgcaacaggaagtgcctgtacacagtccccgcccaccagaacctgctgtccgct
gtccgattccaacgtaaccactgacatttcctgttgaccggagcttacgacaacacagcg
aagatttggagccacncgggctggatgccgctgaagacgttagctggacacgaggggaag
gtgatgggcgtggatgtgtcacctgacggcaagctgatcgccacctgctcctatgaccga
accttcaaactctggctgtcagagtga
DBGET
integrated database retrieval system
