Poeciliopsis prolifica (blackstripe livebearer): 129356424
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Entry
129356424 CDS
T09758
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013
Nucleocytoplasmic transport
pprl03015
mRNA surveillance pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129356424
09122 Translation
03013 Nucleocytoplasmic transport
129356424
03015 mRNA surveillance pathway
129356424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129356424
03041 Spliceosome [BR:
pprl03041
]
129356424
03009 Ribosome biogenesis [BR:
pprl03009
]
129356424
03012 Translation factors [BR:
pprl03012
]
129356424
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129356424
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129356424
mRNA cycle factors
Stress granule specific factors
129356424
Spliceosome [BR:
pprl03041
]
Complex C
Other components
EJC/TREX
129356424
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
90S particles
Helicases
129356424
Translation factors [BR:
pprl03012
]
Eukaryotic type
Initiation factors
eIF-4
129356424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
129356424
NCBI-ProteinID:
XP_054881984
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MASAGVQGRKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgccggggtacagggcaggaagaggctcctgaaggaggaggacatgaccaag
gtggagtttgagaccagcgaggaggtagatgttacccccaccttcgacacgatgggtctc
cgggaggacctgcttcgcgggatatacgcctacggctttgagaagccgtcagccatccag
cagagagccatcaagcagatcatcaaaggccgtgatgtcatcgctcagtctcagtctggg
acggggaaaaccgccaccttctgcatctccgtgttgcagtgtttggacatccaggtgagg
gagacccaagctttgatcctggctccaactcgggagctggcgggacagatccagaaggtg
ctgctggcgctgggagactacatgaacgtccagtgccactcctgcatcggtggcaccaac
gtgggcgaggacatcaggaagctggactacgggcagcacgtggtggccggcacgccgggc
cgcgtcttcgacatgatccggcggcgcagcttgagaacccgagccatcaagatgctggtt
ctggatgaagccgatgagatgctgaacaaagggttcaaggagcagatctatgatgtgtac
cgctacctgcctcctgccactcaggtggttctgatcagcgccacgctgcctcacgagatc
ctggagatgaccaacaagtttatgaccgacccgatccggatcctggtcaagcgtgatgag
ctgaccctggagggcatcaagcagttctttgtcgctgtggagagagaggagtggaagttc
gacaccctgtgtgacctttacgacacgctgaccatcacacaggccgtcatcttctgcaac
accaagaggaaggtggactggctgacagagaagatgagggaggcgaacttcaccgtgtcg
tccatgcatggagatatgccccagaaagagagagagtccatcatgaaggagttcaggtct
ggcgccagccgggtcctgatctccacagacgtgtgggcgcgcggcctggacgtcccgcag
gtgtccctaatcatcaactacgacctgcccaacaacagagagctctacatccacaggatc
gggcggtctggtcgctacggcaggaagggcgtggccatcaactttgtgaaaaacgacgac
atccggatcctgcgggatatcgagcagtactactcgacccagatcgacgagatgcccatg
aacgtggctgacctgatctga
DBGET
integrated database retrieval system
