KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129357636
Entry
129357636         CDS       T09758                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129357636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pprl03041]
    129357636
Spliceosome [BR:pprl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    129357636
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML PRP4 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_like WD40_RFWD3 Beta-prop_WDR11_1st Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 129357636
NCBI-ProteinID: XP_054882701
LinkDB
Position
Unknown
AA seq 509 aa
MSDEEDSAPAMKKSRXFYGSLEEKERQRITMEMASSAAAGSDALKAGIRAGNINISSGET
MEMEERVSERQLEALAEFERRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERL
RSVLSVVGPDALKRSRKDEERAKRSRDECLQTWYHEGPASLKEARLWLARYSLPRAMRRL
EAARALKEVSDATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLVTASWSG
LCKLWSVPDCALIRTLRGHNTNVGAVAFRPQAXVSLDQSDVSLASCAADGTVKLWNLESD
EPVADIEGHSDRVSRVSWHPSGRFLGTTCYDRSWRLWDLELQEEILHQEGHSKGVHDISF
HPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGHHLATGSGDNTCKV
WELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKIWSHPGWMPLKTLAGHEG
KVMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcggacgaggaagactctgctccggccatgaagaagagccgtnngttctacggcagc
ctggaggagaaggagcgtcagcgcatcaccatggagatggccagtagcgctgccgcagga
agtgatgcgctgaaggcgggcatcagagcaggaaacatcaacatctcatcaggagagacc
atggagatggaggagcgtgtaagcgagcgccagctggaggcgctggccgagtttgagcgg
cggcgagcgcgacagatcaccgtctccaccgacgatgccgaggtgaaggccggcctgcgg
gcgctgggagagccaatcacgctgtttggagaggggccagccgaccgccgagagaggctg
cgcagcgttctgtctgttgtgggtccagacgccctgaagagatccaggaaggacgaagag
agagccaagaggtcacgggacgagtgtctgcagacgtggtaccacgaaggccccgcctcc
ctgaaggaagctcgcctctggttggccagatattctctgccacgggcgatgaggcgtctg
gaagctgcacgggctttgaaggaggtttccgatgcgacgaagacgatccgccagcaggag
ctgcacaagtcgctgaggaatctgaacaacttctgcagtcagattggagacgatcggcca
atcagtttctgccacttcagtccggactccaagatgctcgtcacggcgtcctggagtggc
ctgtgcaagctgtggtcggtcccggactgcgccctgatccggaccctgagaggacacaac
accaacgtgggcgccgtggcgttccgcccgcaagccngcgtctctctggaccagtcagac
gtcagcctggcgtcctgcgccgccgacgggacggtgaagctgtggaacctggagagtgac
gagccagtggcggacattgagggtcacagtgatcgggtttccagagtttcctggcatccg
tctggaagattcctgggaaccacctgctacgaccgctcctggcgtctctgggatctggag
ctgcaggaggaaatcctccaccaggaaggtcacagcaaaggagttcatgacatcagcttc
catcctgatggctccttggccgctacaggagggctcgatgccttcggcagggtgtgggac
ctgaggacggggcgctgcgtggtttttctggaggggcacctgaaggagatctacagcgtt
cacttcagtcctaacggccatcacctggccacaggaagtggtgacaacacctgtaaggtg
tgggagctgcgcaacaggaagtgcctgtacacagtccccgcccaccagaacctgctgtcc
gctgtccgattccaacccactgacggtcatttcctgttgaccggagcttacgacaacaca
gcgaagatttggagccacccgggctggatgccgctgaagacgttagctggacacgagggg
aaggtgatgggcgtggatgtgtcacctgacggcaagctgatcgccacctgctcctatgac
cgaaccttcaaactctggctgtcagagtga

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