Poeciliopsis prolifica (blackstripe livebearer): 129358733
Help
Entry
129358733 CDS
T09758
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129358733 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129358733 (edc4)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129358733 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
129358733 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
SYCP2_ARLD
Apolipoprotein
Band_7
Motif
Other DBs
NCBI-GeneID:
129358733
NCBI-ProteinID:
XP_054883829
LinkDB
All DBs
Position
Unknown
AA seq
1385 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSSADMQSSDDQRKLSFNGELNGLLGAGLLGSSIS
ESTRPISTDGSVQESQRICLTGDDGSTCIPIVLNNVEIVASQDSSINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLA
FAHLDSSLLGCVDEAGNLMVWHLTLTRSKILDQIVVHIQRSEDAPLNSHRRLIWCPYILE
DSEENQDDTSQTLALLHEDGAEVWDLEVLRANNSSWPVDASEIKDGLIIVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHEGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKLWCTVSWTCLQTIKFSPDPFNSMVLPSLKASLDLAAEYLIL
TDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLPAEEE
SESMSTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNAGFNTSGFLPHSDSQDGFA
GFSDHLTDQSSDKDSRSGSQSDLRKIPSLPVPSDFLSNSGPSGGPMPKLMTPDAFMTPST
SVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQSPIRGENNGGSSLGLSVATSSPRVA
PAVLLTGLENLQALACPSSPLGLDSPQVPDSPLLPLLASPTRARSPDVISSASTVMSQDM
PEIATQTLQLQRSHGLEALQLPALQADSMASAACALHLLTSPRSATNNGLLPLELGGAEG
SSMADDSESRLGNKPSLLENTLSQENTGVSGGSSDGSVSHTSWPAAPDITRETRNSLRDN
GLGECLRDESSERRLSSPFHRRSYHLPQNDSQDVGADQSDPDDEIASLASSSGNCGSRSS
HRMPVKDWKSSPRASPKLKRKLKKDDGDSSQPRHMDPGQFNTETQDELLMLLRSQQRELT
DLCSLVETMPGTIMAQVEHVLMKHQEQEQRRLDRALAENQSRQQQLHEQLSQQLSHALST
ALTNRMDKVLREELKKTVPQTISKSLEPVTGQLNNSIAAKMAAVEVTIKDIVIKVVKSKN
TTDAMGRAAAEAMQGPIQAAYKDVFQSTVLPVFERGCQSMFQQINDSFKQGTQDYIQQLE
AHLKSRKQREQEARDPVIGQLQQTIDGFQSCTDQLASSVSAAVRAEVQHQMQVVVGNLQE
SILSHLQRIVKGEVSLAMREQQAVVTSSIMQAMRSAAGTPVPTAHLDYQSQQANILQLLQ
QGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATRS
QLKISYLEDAVMNLDHSEPLTRDHMSSVLAQVRSKLLAFLQQDPHSPLSKRARGLLLMLH
GVVNH
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaacatagacatcgagggagcgacccagcacctccgggacatcctg
aagctcgaccgtccggggagcagcgccgatatgcaatcaagtgacgatcagagaaaactg
tccttcaacggagagctgaacggtttactgggagcaggactactggggagcagcatatct
gaatccaccagacccatttccacagacggcagcgtccaggagagccagaggatctgcctg
actggtgatgatgggagcacctgcatccccatcgtcttaaacaatgtggagatcgtggcg
agccaggactcaagcatcaacagcaaggcgcggggcagcaacaaggttaaaattcaacct
gtcgccaagtacgactgggagcataagtattattacggccgactgatagccgtgtccaac
tccttcctcgcttatgccatcagaggagccaacaaccatgctatgattcgtgtgctgagt
ttggacttcagcgagcgctccttgctgaagggcttcaccggcgccgtcacagatcttgct
ttcgcccacctcgactcctctctgttgggctgcgtggatgaggcgggaaacctgatggtc
tggcatctcacgctcaccagaagcaaaatactggatcagatagtggttcatattcagcgt
tcagaagacgctcctctgaactcccacagacgcctcatctggtgcccatacatcctggaa
gacagcgaggagaaccaggatgacaccagccagacgctggctctcctgcatgaggatggg
gctgaggtttgggaccttgaagttttgagagccaataacagcagttggccagttgatgcc
tcagaaatcaaagatggcctcattatagtcaaaggacacacacagagagtcagtgaagga
gctctgtcccctgatgggaccgttttggctacagcgagtcacgatggttacatcaagttc
tggcagatctacatagaaggaggacaagataagcccagatgtctccatgaactccgacct
cacgaaggacgtccgctctcctgtcttctcttctgtgacaaccacaaacggcaggatcca
gaggttccattctggaggtttctgataactggagcagaccagaaccaggagttgaagctg
tggtgcacagtttcctggacctgcttgcagaccataaagttttctccagatccattcaac
tctatggttcttcccagtctcaaggccagtttagatctcgctgctgaatacttgatcctc
actgatgttcaaagaaaggtcctctatgtgatggagctgcggcaggacctggagaagggc
aaagcgagcttcacggccgtgtcggagttccttctgacccaccctgtgctcagcttcggg
gtgcgtgacgtgacccacagccgcctgaggcacaccgaggttctgccagcggaggaggag
agcgagagcatgtcgacagagggcactcaaggacctgcagagtccaaatctgggatccaa
attaaactctactgtgttcacacaaagagtttgcaggatgtccagatctggtttcagccc
aacgcagggttcaatacgtcaggttttcttccccactctgactcccaagatggttttgct
gggttttcagaccacctcaccgaccagagctccgacaaagactctagaagcggttcgcag
tccgaccttcggaagatcccctcacttcctgtaccctctgacttcctgtctaactctgga
ccatccggtgggccgatgcccaagctgatgacccccgacgccttcatgacaccaagcact
tcggttcctgcgtctcctggcagcagcgccagcagtctgactattgttacagccatcagc
agtaactctgactcaacaaatagagccatggacgatgtcagtcagagtcctatcagagga
gaaaacaatggcggcagcagtttgggactctctgtcgccaccagcagtccgagggttgca
cctgcagttctgctgacgggcctggagaacctgcaggctctggcttgccccagcagccct
ctgggcctcgactcacctcaggtcccagattctcccctgctgccgctgctggcttcgccg
accagggcccgctccccagacgtcatctcctctgcctccaccgtgatgtcgcaggacatg
ccagagatcgcgacgcagacgctgcagctgcagcgcagccacggcctggaagccctgcag
cttcctgcactgcaggcagacagcatggcctccgctgcatgtgccctgcacctcctgacg
tcgccgcgctccgccaccaacaacggtttgttgccccttgaactcggaggtgctgagggg
tcgtcaatggcagacgattcggagtccagactcggtaacaaaccgtctcttctggagaac
acgttgtcgcaggaaaacactggggtcagcggagggtcgtcggatggcagcgttagccac
acgtcatggccagcggctccagacatcaccagggaaaccaggaacagcctcagggacaac
gggctgggagagtgtttgcgagacgagtcgagcgagcgccgcctgagctctcctttccac
cggcgctcctaccacctcccccagaatgacagccaggatgtcggcgctgaccagagcgat
cctgatgacgagatcgccagcctggcttcatcctctgggaactgcggctctcgctcctct
cacaggatgccagtgaaagactggaagagctcgccacgagcctcgccgaaactgaagagg
aaactcaagaaagatgacggtgactcttctcagcccagacacatggatcctggtcagttt
aacacagagactcaggatgagctcctgatgctgctgcgcagccagcagagggagctaacg
gatctgtgttctctggtggagaccatgccgggaaccatcatggcgcaggtggagcacgtt
ctgatgaaacaccaggaacaggaacagcgcagactggaccgagctctggctgagaatcag
agccgccagcaacagcttcacgagcagctgagccagcagctgagccacgccctcagcacg
gcgctgaccaacaggatggacaaagtcctgagagaggagctaaagaaaacagtaccacaa
accatttctaagagtctggagccggtgacagggcagctgaacaactcgatcgccgctaag
atggctgccgtggaggtcacaattaaggacatcgttatcaaagtggtcaaatccaagaac
actacggacgccatgggccgggccgcggcggaggccatgcagggccccatccaggccgcc
tacaaagacgtcttccagagcacagtgctgcccgtgtttgaaagaggctgccagtccatg
ttccagcagatcaacgacagcttcaagcaggggacgcaggactacatccagcagctggag
gcccacctgaagagccggaagcagagggagcaggaagcgcgggaccccgtgatcggccag
ctgcagcagacgatcgacggcttccagagctgcaccgatcagctggccagcagcgtctct
gccgccgttcgagccgaggtccagcaccagatgcaggtggtggtggggaacctgcaggag
tccatcctgagccacttgcagcgcattgtgaaaggcgaagtgagcctggcgatgagggag
cagcaggccgtcgtcacctccagtatcatgcaggccatgcgctctgccgccgggacgccc
gtccccaccgcacacctcgactaccagtcgcagcaggcgaacatcctgcagctgctccaa
cagggccagctcaaccaggccttccagcaggctctgtctgcgacggacctgaacctggtt
ctgtacgtgtgtgagaccatcgactcccagcaggtgttcggccagacgccgtgccccctg
agccagccggtgctgctgtcgctcatccagcagctgtcctccaacctcgccacgcgctcc
cagctcaagatcagctacctggaggacgctgtgatgaatctggaccacagcgagccgttg
accagggaccacatgtcgtcggttctggcccaggtccgatccaaactgctggccttcctg
cagcaggacccgcacagcccgctcagcaagcgggcgcgcggcctgctcctgatgctgcac
ggagtcgtcaaccactag
DBGET
integrated database retrieval system
