KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129358831
Entry
129358831         CDS       T09758                                 
Symbol
col4a3
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K06237  collagen type IV alpha
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04382  Cornified envelope formation
pprl04510  Focal adhesion
pprl04512  ECM-receptor interaction
pprl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129358831 (col4a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129358831 (col4a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129358831 (col4a3)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    129358831 (col4a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pprl04147]
    129358831 (col4a3)
   00536 Glycosaminoglycan binding proteins [BR:pprl00536]
    129358831 (col4a3)
Exosome [BR:pprl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   129358831 (col4a3)
Glycosaminoglycan binding proteins [BR:pprl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129358831 (col4a3)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 129358831
NCBI-ProteinID: XP_054883998
LinkDB
Position
Unknown
AA seq 1675 aa
MASPAAARRRIPRLLVLVLGAPLLLLLASAELVCHCTGKSRCHCEGVKGQKGEAGYLGDP
GLPGVMGFPGSEGHLGSPGEKGDPGNAGSRGIKGSRGIPGRPGFPGPPGLPGLPGHEGPL
GRPGLPGCNGTKGEAGSRGVPGPSGPPGPRGPPGSQGMKGDSVMIPFRQEVKGAAGPQGP
TGRKGQSGHGGEPGKPGRPGAHGLPGRPGPAGIQGEKGLEGSSPTSPGPQGWKGDRGPPG
IPGKHGIKLYAEGPKELKGEPGEAGQKGFPGLPGEPGSLGAKGEKGDRGEPGSLGKPGKM
GLLGELGQLGDPGDVGFIGPPGLDGAVGEKGDRGPAGPPGEVIFNHKSVKGQRGFPGPLG
PAGFPGIQGPIGFPGLKGKSGEASNGPPGSPGPMGSVGPKGEPGPPGLVVTGPAGFTGAP
GPLGLQGEPGEPGIPNVDVVGQGDPGRKGSKGSRGPPGDKGTPGEKGQKGEVCTDCHVKA
GTPGPQGPPGPPGQKGLPGAVGSSGPAGDKGLKGAAGPPGPQGPWGPPGFPGPQGPPGEP
GFNTWPGQKGEAGDPGDAGQPGEVGRDGFPGRPGPKGRMGEKGNPGPQRSKGNRGPPGPP
GASGTPGPPGPPGPPGPPDYPGRPGPTGPKGANGYMGDPGAPGPKGEKGSKGNIHNVPGE
PGPKGHRGWPGETGPEGETGPPGLRGWPGPKGQKGCDGSSRKGNRGNAGSKGDKGSKGKP
GAPCYGMKGRAGPPGPLGPPGPKGNRGFGPPGEAGEPGPRGPDSCDGPPGDPGPPGRPGV
QGPVGQDGRPGPKGHRGVDGEPGPRGPFGPCVPGAPGPPGPQGPAGPIGPTGTTGPPGPK
GDPGTPFSGTPGPIGPPGPPGPDGGPGPAGETGPKGWRGNPGEPGGPGPRGDMGVPGPMG
RPGNAGPPGPSGEPGPQGQKGRDGSRGSPGPAGQPGDKGETGPKGSSTAIGIPGDPGDPG
FPGPRGLTGEKGQGGPPGSPGPPGLDGKPGGPGPPGRPGDPGRDGERGPPGGPGPPGDKG
RTGRPGDPGEKGANGPNGLPGSDGGPGQPGDQGPKGEPGFGPGAKGCKGTKGPPGPPGPS
GPKGPGGPAGDVGPPGPCGPCGPVGSEGPPGSKGFPGGAGEKGLDGPPGTCGPPGPSGKP
GWQGSPGAPGPPGPKGDQGRDGFPGADGEKGDMGSCVYGPGGPTGGPGPPGPVGERGPPG
CCGPPGPSGPAGDPGYKGTKGPPGPPGCPGKKGGECIDGMKGYKGFPGPKGPKGPKGPPG
PPGPGYKGHKGVKGEPGLPGPPGPIGDPGPYGPPGPCGPPGYPGDKGCRGPNGPKGQIGM
EGEKGPPGNSGPGGPSGRMGSPGPNGKDRYVDVRLIPGDPGEEGPPGQMGGIGYPGSPGA
RGADGSEGSPGEPGRTGRPGRDGPRGEDGERGRIGRKGANGERGRVGAKGPPGEPGEPGE
PDYGPPPRRTGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCL
QRFSTIPFLICETGEECRYAERNDYSYWLSNIRSPTNQSDPEAALESKISKCSVCESEAN
VIAIHSQTSAVPRCPVDWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFLEC
SSSSGTCKYDNALYSYWLAALDPNNMFRRPSSWILPGNNPDNISRCRVCMKTMQM
NT seq 5028 nt   +upstreamnt  +downstreamnt
atggcgtctccggcggctgcgaggcggaggatcccccgcctgctggtcctggtcctcggc
gcgccgctgctgctgctgctggcctccgcagaactggtctgtcactgcaccgggaagtcc
cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggatacctgggagaccca
ggacttcctggagtaatgggatttcctggaagcgaaggtcacctagggtcaccaggagaa
aagggtgacccgggaaatgcaggcagtcgaggaattaagggctctcggggaattcctgga
agaccaggttttccaggacctccaggtcttccaggccttcctggacatgaagggccactg
ggtcgacccggactcccaggatgcaacgggacaaaaggggaggccggatcccgaggggtt
cctggaccttcaggaccgccaggaccacgagggcccccggggtcacagggcatgaaggga
gactcggtcatgatccccttcaggcaggaagtaaaaggagcggcgggaccacaagggcca
accggcagaaaggggcaaagtggacatggaggagaaccggggaaaccgggtcggcccgga
gcccatggacttcctggaagaccaggacctgcaggaattcaaggagaaaagggtctggaa
ggttccagtccgacgagtcccggtccgcagggctggaagggcgatcgtggccctccaggg
atccccgggaagcacggcatcaaactctacgctgaaggacccaaagagctgaagggcgag
ccgggcgaagcgggccagaaagggtttcccggtcttcctggggagccagggagcctgggg
gcgaaaggagagaagggcgacagaggagagcccggctcattgggaaaaccaggaaagatg
ggattactgggagaactgggacagctgggtgaccccggagacgtcggcttcatcggcccg
cccggcctggacggcgccgtgggagaaaaaggcgaccgagggcctgcagggcccccagga
gaggtgatctttaatcacaaatccgtgaagggccagcgaggtttccccgggccccttgga
cccgccgggttccccgggattcaaggtccgatcgggttcccgggactgaagggcaagtca
ggtgaggcctccaacggaccgccaggttctcctggtccaatgggctcagttggacccaag
ggggaaccaggaccaccgggcctggtggttaccggaccggcaggattcactggagcccca
ggacctcttggacttcagggagaaccaggagagcctggaataccaaacgtggacgtcgta
ggacagggtgatcccggtaggaagggctcaaaaggctctcgaggccctccgggggacaaa
gggacgcctggggaaaagggtcagaaaggggaggtttgcacagactgccatgttaaggct
ggaactcctggacctcaggggccaccagggccgccaggtcagaaagggttgccaggtgcc
gttggatcttcaggaccagcaggtgataaaggcttgaaaggagctgcaggcccacctgga
ccacagggcccctggggccccccggggttcccggggccccaggggcctccgggcgaaccg
gggttcaacacctggccggggcagaagggggaggccggggacccgggcgacgcggggcag
ccgggcgaggtggggcgggacgggttcccaggacggccgggtccaaaaggccgaatggga
gagaaaggaaacccggggccgcagaggtcaaaaggtaaccggggcccaccgggcccccct
ggtgccagtgggacgccgggcccaccgggtccaccgggcccaccgggtccgccagattat
ccgggtcgtccaggaccgacggggcccaaaggagctaacggctacatgggagatcctgga
gcaccgggccctaaaggagagaaaggctctaaggggaacatccacaacgttccaggagaa
ccgggaccgaaaggccacagaggatggccgggcgaaaccggacctgaaggtgagaccgga
cctccgggtctcagaggatggcctggtccaaaaggtcaaaagggctgtgacggttcctct
cgcaagggtaaccggggcaacgcggggtcaaaaggagacaaggggtccaaaggaaagcca
ggggccccctgctatggcatgaagggccgagcggggcccccgggccccctgggacccccc
ggcccaaaggggaacagaggctttgggccgccgggtgaggcgggtgaaccgggccctcgg
gggccggacagctgcgacggacctccgggcgacccgggaccgccgggacggccgggagtt
cagggacccgtgggacaagatggccgcccggggcccaaaggtcaccgtggcgttgatggg
gaacctggtcccaggggtccgtttgggccctgtgtccccggagctccaggacctccagga
ccacaagggccggcgggtccaattggacccacaggaaccacggggccgccgggtccgaag
ggagatcctgggacccccttctcgggaacccccgggcccattgggccaccgggcccaccg
ggacccgatggaggtccagggccggccggggaaacggggcccaaagggtggagagggaat
cccggagagcctggaggtccagggcccagaggagacatgggtgttccagggccgatgggg
cgtcctggaaacgccggaccgcctgggcccagtggagaaccgggaccacaaggtcagaag
ggtcgggacggttcaagaggttctccaggaccggcaggacagccaggggacaaaggggaa
actggacccaaaggctcctcaacggccattgggatcccaggggatcccggagaccctgga
tttccaggacccagaggtctcactggggaaaaaggacaaggaggccccccagggagcccg
gggccaccgggcctggacggaaagcctggaggtccggggcccccaggacgtcctggagat
ccgggtagagatggagagagaggtcctcctggtggccctggacccccaggggacaaggga
cgcactggtagaccaggcgacccgggtgaaaaaggtgcaaacggacccaatgggctccct
ggttcagatggagggccaggacaacccggagatcagggacctaaaggagaaccaggtttt
ggaccgggagcaaaaggctgtaaaggaacgaaggggcctcctgggcctccaggaccttca
ggtccaaaaggaccaggaggaccagctggagacgttggccccccggggccctgcggtcct
tgtggacctgtgggatccgaagggccgcctggatccaaaggttttcctggtggagccggt
gagaaaggtttggacggccctcctgggacctgtggccctccagggccttctggaaaacca
ggatggcagggctctcctggagcgccaggtccacccggacccaaaggagaccagggccgg
gacgggttccccggggctgacggagagaaaggagatatgggctcgtgtgtttatggacct
ggggggccgacaggaggaccgggcccccctggacccgtgggggaaagaggtccgccggga
tgctgtgggcctcctggaccctctgggcctgcaggagacccgggttacaaaggcactaag
ggccccccagggcctcctggatgtcctgggaagaaagggggagagtgcattgatggaatg
aagggatataaaggatttcctggacctaaaggaccgaaaggccctaagggaccgcccggt
ccgccgggtcctggttacaaaggccataaaggcgttaaaggagaaccgggtctcccagga
ccaccgggaccaatcggtgaccccggtccttatggacctcctggtccttgcgggccgcct
ggatatcctggagataaaggctgcagaggcccgaatggaccaaagggtcaaatcggtatg
gaaggggagaaaggaccgccaggtaactctggcccaggtggaccatcaggacgaatgggg
agcccaggaccaaatgggaaggacaggtatgttgatgtgcggctgataccaggagaccca
ggtgaagaaggacctccaggccaaatggggggaatcggatacccgggttcacctggagcg
aggggagctgatggttcagaaggctcacctggagaaccgggtcggacgggaagacctggg
cgtgacggaccgagaggagaggatggagagagaggacgaatcggccggaaaggcgcgaac
ggagagcgtggcagggtgggagccaagggtcctccaggtgagccaggtgagccaggtgag
ccagactacggcccgccgcccaggaggaccggcttcctgttcagcagacacagccaggac
agcgccgccccggcctgcccggcccagtccacgctcatattcagaggatactcgctgctc
ttcatcaacggctacagccgcgctcacggacaggacctgggaacggtcggcagctgcctg
cagcgtttcagcaccattcccttcctgatctgtgagactggagaggaatgtcgatacgct
gagagaaacgactattcctactggctgtccaacatcaggagcccaacaaaccagagcgac
ccagaggcggcgctggagtccaagatcagcaagtgttcggtgtgcgagtctgaagccaac
gtgatcgccatccacagccagaccagcgccgtcccgcgctgccctgtggactggcagtcg
ctctggaccggattctcctttgtgatggaaactggtgtcggtgccgagggctcgggtcag
cctctggtttctcccggatcctgcctggaaaacttccaaggaatgccgttcctggagtgc
agcagcagctcgggaacctgcaagtacgacaacgcgctgtacagctactggctggctgct
ctggacccgaacaacatgttcaggaggcccagcagctggatccttccagggaacaaccca
gacaacatcagccgctgcagagtctgcatgaagaccatgcagatgtga

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