Poeciliopsis prolifica (blackstripe livebearer): 129358832
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Entry
129358832 CDS
T09758
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04382
Cornified envelope formation
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04518
Integrin signaling
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129358832 (col4a4)
04518 Integrin signaling
129358832 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129358832 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129358832 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129358832 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129358832 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129358832 (col4a4)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129358832 (col4a4)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129358832 (col4a4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129358832
NCBI-ProteinID:
XP_054883999
LinkDB
All DBs
Position
Unknown
AA seq
1662 aa
AA seq
DB search
MSAGAGSAPRRHPWIWCFLALVTAPPGGQGGDLMEPCGGRDCTTCQCLPAKGARGFPGLL
GPQGPEGPPGFPGRQGLPGQKGGRGAEGPMGGYGIKGDEGPAGLHGFPGLDGVSGLPGPA
GGPGHPGLDGCNGTRGNRGYLGFPGEQGSNGEPGFTGPKGLKGEPSADFIQYPGVPGEAG
PSGLPGLPGEDGLPGPTGPAGPTGSAGIAGSPGSPGPRGPPGQKGRLLPGPKGDEGDQGP
QGPPGPFEYIDPPEDLYIKGEKGSPGEPGLRGVQGLPSRDAPPGIKGETGIVGFPGARGD
SGRPGPSGRKGARGMRGSQGLPGLIGQEGFKGFAGDPGPEGPPVIDDVTHMGEAGDPGLP
GGRGPVGDTGPMGTLGPPGIPGSSTPGLKGFDGPKGEPGYKGERGEPGQTTDEVAHGEPG
KPGQRGQRGPKGLQGLPGTVCLKGDMGDMGDPGDRGFPGPRGDEGFKGVPGECRCKSVDL
KGPPGPPGAEGRKGSTGQPGSPGPKGRVGHPGDPGAKGPQGPKGFRGPDGQKGRKGFTVN
GWKGEKGEKGRRGREGPPGAWGAVGPPGRPGPPGDPGLKGDIVPSFPGNKGFPGPPGPDG
FPGRPGPPGVVVVGPPGARGPPGDPGPDGFPGPPGMKGDPGDRGPCVLNPGRPGPKGDRG
PPGGPGPPGARGTAGVRGPDGPKGDPGLSYAPGPPGDPGPPGADGDPGDVGNDSCCSPGS
PGSPGPMGRPGFPGPSGNTQSGPQGPRGWPGPPGSPGRKGRLGAPGNPGAPGPQGPFGFP
GVKGHKGNAGVPGRPGPQGPTSDDCKAGRPDEGPPGPQGPRGPQGPRGPCGYRGEPGDKG
LPAFGPKGKMGEPGVPGSPGKQGCKGPQGPLGDTGPMGPFGGKGLTGPGGFEGRPGFPGN
QGNPGGPGNPGERGPNGEDGDRGCAGPKGTKGNKGCAGPPGELIQIPEKGPRGPPGRPGE
HGFSGPRGDKGVSGYPGNTGYPGPDGIPGCKGSQGPQGPQGKQGPPGPPGTKGHQGYFGF
PGLNGEPGDPGYPGPPGRPGNPGYRGPKGENGDAFGGPGPPGDKGHPGDRGPDGPSGPTG
DQGPKGISGPQGQKGCKGHKGSQGYPGEPGVAGPPGPRGYLGLRGPPGRDGADGPPGRDG
NPGNKGTPGASGLHGLDGLSGRKGSKGSKGVCPGNGKCEKGRPGPPGPKGPPGPPGPSCP
PKIGPPGPKGPTGSKGSPGDDGPPGPPGSNCKNPKPGPYGDPGDMGPDGDPGCPGDMGDP
GPNTPNCGNKGDTGDPGYSGPKGPRGYPGPPGPPGNPGNQGPKGMRGDLGFLGIPGEQGA
RGHPGYPGPKGRPGCKGSDGPKGQKGRIFSNGPPSRPIRGPRGPPGRPGPSGDWGLMGEI
GPRGRNGMKGDPGADGVIGRQGREGSPGQMGEPGQPGENGVLGERGDPGPPGDPGLPGPA
GGTKPGFLLVKHSQSSNEPTCPPNTHLLWTGYSLLYLEGQEKAYSQDLGQAGSCVPLFST
LPFSVCEAKKCKYANRNDKSYWLSTMMPHPDNPFSGDTIKEYISRCVVCEAPSAAVAMHD
PNSREPPRCPPHWSRLWTGYSFIMFSGGGDEGGGLSLTSPGSCLSQFKAQPFVECQGARG
TCHFFANIYSFWLTTQSGTEGALTDSDQQRAHVAQCSVCIRM
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccggtgcaggctccgccccccggcgccatccgtggatctggtgtttcctggct
ctggtcacagctcctccaggaggtcaagggggtgacctgatggagccgtgtggtgggcgg
gactgcaccacctgccagtgtttacctgccaaaggagccagaggtttcccaggtcttctg
ggtccgcaggggcctgaggggcctccaggcttcccgggcagacagggtcttccagggcag
aagggcggtagaggagccgaggggccgatgggaggttatgggataaaaggagatgaaggc
cccgccggtctgcacggttttccgggtctggacggagtctcgggcctccccggcccggct
ggagggcctggacatccaggtctggatggatgcaacggaaccagaggaaaccggggctat
ctggggtttccaggagaacagggctctaatggagaaccgggttttactggtccgaaggga
cttaaaggagaaccatcggccgacttcatccagtaccccggagttcctggcgaggccggg
cccagcggactgccaggcctgccgggggaagacggtctgccgggaccaaccggacccgcg
ggtccaaccggatcagcgggaatcgctggctctcctggttcacccggaccgaggggcccg
cctggtcaaaaaggtcgattactgccgggaccgaaaggagacgagggggaccagggcccc
caggggcctccggggcccttcgagtacattgaccctccagaggacttgtacatcaaaggg
gagaagggatctccaggggaaccaggactgcgtggcgttcagggactcccgagtcgggat
gcgccgcctgggatcaaaggagagacggggatcgttggatttccaggagccagaggggat
tctggtcgacccggtccgtccggacggaaaggcgcccgggggatgagagggagccaaggt
ctcccaggactgataggtcaagaaggtttcaagggctttgctggtgatccgggccccgaa
ggcccccctgtgatcgatgatgtcactcacatgggtgaggccggggaccctgggctcccc
ggggggaggggccctgttggcgacacggggccaatgggaacgctcggtcccccaggaatc
ccaggatcatcaacaccaggactgaaaggttttgatggtccaaagggagaacctgggtac
aaaggggagagaggagagccgggtcagactacagacgaagtggcacatggagaacctgga
aaaccaggacagcggggacaacgagggccgaagggactgcagggcctcccaggaacggtc
tgtcttaaaggggacatgggagacatgggagacccaggggacagaggctttccaggaccc
agaggcgatgaaggctttaaaggtgttcctggtgaatgtcgatgtaaatctgttgacctg
aagggccctccagggcctccaggggccgaagggcgtaaagggtcaacaggtcagcccgga
tccccaggccccaaaggaagggtgggtcaccctggagacccaggagcgaaggggccccag
ggaccgaagggcttcaggggacccgacggccagaaaggacggaaaggtttcactgtgaac
ggctggaaaggtgaaaagggagaaaagggcaggaggggccgcgaagggcccccaggagcc
tggggggcagtcggacccccggggcgcccaggaccacctggagatccgggacttaagggg
gacattgtcccttctttccctggaaacaaaggcttccctggacccccgggaccagatgga
ttcccggggcgcccgggtccccctggagtcgtggtggtggggccccctggggcgcgaggg
ccccctggagacccgggacctgatggatttcctggaccacctggaatgaagggagatcca
ggagaccgaggcccctgtgtgttgaatcccggccgtccggggccaaagggagaccgtgga
ccaccaggtggcccaggtcctcccggtgctagaggcaccgctggcgtccgagggccggac
gggcctaaaggggacccgggactgtcttatgctccaggaccgcctggggacccaggacct
ccaggtgctgacggagatcctggagatgtcggaaacgacagttgttgttcccctggaagt
ccaggttctccggggccgatgggccgccctgggttccccggaccaagtggcaatactcag
agtggcccccaggggcccagaggctggcctggaccgccggggtccccaggacgtaaagga
cgcctcggcgcgccgggcaacccgggagcgccaggtccccaggggccttttgggttccct
ggagtgaagggacacaaaggaaatgccggcgtccctggccgaccaggcccccagggaccc
acatcagacgactgtaaggcggggaggcctgatgagggccccccaggccctcagggacct
cgtggccctcagggacctcgtggcccttgcggttatagaggtgaacctggggataaaggg
ctcccagcttttggtccaaaaggcaagatgggagaacctggagttccagggtctccagga
aaacaaggatgtaaggggccccaaggccctcttggggacactggcccaatggggcccttt
ggtgggaaaggtctgactggacccgggggttttgaaggaaggccaggttttccaggaaac
cagggcaatcctggaggcccaggcaaccccggagagcggggacctaatggagaagatgga
gatcggggttgtgctggcccaaagggaacaaaaggtaacaaaggttgtgccggtcctcca
ggagaactcattcaaatacctgagaagggcccaagaggaccaccaggacgccccggcgag
cacggattctccggaccacgaggagacaaaggtgtgagtggatacccagggaatactggg
tatccaggtcccgatggaatcccaggttgtaagggatctcagggaccccaagggccccag
ggtaagcaaggcccacctggacctccaggaaccaaaggacatcaaggatacttcggattt
cctgggctgaatggagaaccgggtgacccaggatatccgggcccccctggaagacctggt
aatccaggatatcgtggacctaaaggtgaaaacggagatgcctttggtgggcctgggcca
cctggagataagggccatcctggggaccgaggccctgatggccctagtggccctacagga
gatcaggggcccaaaggcatctctgggccacaaggacagaaaggatgcaaggggcacaaa
ggatcacaaggataccccggagaaccaggtgtggctggtcctccagggcccagaggttac
ctggggcttcgagggcctcctggtcgagatggagcggacggtcccccggggagggatggt
aacccaggaaacaaaggaactccaggggcatcaggtcttcatggattagatggactgagt
ggacggaaaggttccaaggggtccaaaggtgtatgtccaggcaacggtaaatgtgaaaaa
ggccgtccaggccctccaggccctaaaggtcctccaggtcctccaggtccctcttgtcca
cccaagatcggcccaccaggacccaaaggcccaacagggtccaaagggtctccaggtgat
gatggaccgccgggtccacctggaagcaactgtaaaaaccccaaaccggggccatatggg
gatcctggtgacatgggcccagatggagatccaggttgtcctggtgatatgggagatcct
ggtccaaatacaccaaactgtgggaacaaaggagacaccggtgatccagggtactcaggg
ccaaaaggaccccgtggatatccagggccacccggaccaccaggcaaccctggaaaccaa
gggcccaaaggtatgagaggcgacttgggtttcctgggcatccctggagaacagggtgcg
aggggtcacccaggttacccagggcccaaaggaaggcctggatgcaaaggatcagatggg
ccaaaggggcagaaaggccgaattttctcaaatggccctccgtcccgaccgattaggggc
cctagagggccacctggccgccctggacctagcggagattggggccttatgggcgaaatt
ggccccagaggtagaaatggaatgaagggggatcctggagctgatggagtaataggacgc
caggggcgagaaggttccccgggacagatgggagagccaggccagcctggagagaacgga
gttctgggagaaagaggtgatccaggtccccctggtgacccaggtctaccggggccggcc
ggaggcaccaaaccagggttcctgttggtgaaacacagccaatcaagcaatgaaccaaca
tgtccgccgaatacgcatctgctttggactggatacagcctgctgtacctggagggccag
gagaaggcgtactcccaggatctgggtcaggccggttcctgcgttcccctgttctccacc
ttaccgttctccgtctgcgaggccaaaaagtgcaaatacgccaatcgaaatgacaaatcc
tattggctgtcgacgatgatgccgcatccagacaatccattcagtggagataccatcaag
gagtacatcagccgctgcgtggtgtgtgaggcgccctctgctgccgtggccatgcatgac
cccaactccagagagccgccacgctgtcccccccactggagccggctgtggaccggatac
tccttcatcatgttttcaggtggtggtgatgagggcggtggcctctctctgacctcgcca
ggcagctgcctgtcgcagttcaaagctcagcccttcgtggagtgccagggcgcgcgggga
acctgccatttcttcgccaacatctacagcttctggctgaccacccagagcggcactgag
ggggcgctgaccgactccgaccagcagagggcgcacgtcgcccagtgcagcgtctgcatc
cgcatgtga
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integrated database retrieval system
