Poeciliopsis prolifica (blackstripe livebearer): 129358867
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Entry
129358867 CDS
T09758
Name
(RefSeq) protocadherin Fat 4
KO
K16669
protocadherin Fat 4
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprl04515
]
129358867
Cell adhesion molecules [BR:
pprl04515
]
Cadherins
Cadherin related
129358867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
EGF
hEGF
EGF_TEN
EGF_CA
Cadherin_CELSR2_9th
EGF_3
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
129358867
NCBI-ProteinID:
XP_054884068
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MENHDVPFAIEETFGELLTTDFLDRETVAFYTLTVIGMDMHPTQPLSSSVLVTVLVGDIN
DHWPQFLDSPFVAYVPTEFPPGSVVCAVRAIDGDTDMNAELHYSLYGQSSDLFSIDPNSG
TVFTSSLLQSTDDFVINVYVEDAGENPKFDITTISIRFHNISDFPEMNVDVLSYSLFEDE
PVGTVVAVISASSIRAEPVSFYLASGNFEEMFHLDQLGGALTVENPLDYESKKEFSLLIE
ARDSAEIAVPYDLLVGTEVAMFTATDLDVNSSDYIEYSISGGTDIVETLVNINVIETNDA
PLFTSTWYEADVKEDTPTGTSVLTVSALDQDSVLDWNQFIFRIVDGNINSSFSIDPLNGI
VLVNSDLDRERWPVYNLTVTATDHGSPPATGTTNVIVNILDINDNAPQLVTNKIQVKENQ
PEGAIVARLNAFDFDLPPNQGPFTFWLSNLSTESAFFLTPDGVLLTRRVVDREHVSEYRL
LVVVKDAGFPLSLSSTTTLHITVEDENDNPPLPRNIFIEVKYFGSSFNGGMIGNVHPEDH
DESDAFLCSIISGPINMFMIPNGTCELWSSPFQGEATFNVTVEATDQVHFPVNNSIYVNY
KGFTNASVDSCIFFYVASHSMEIFLTNRYLRFVKALDSLFNLQASKTHVFGIKHIGMEIL
LLAAVKNYNGQYLSREVASSISVGHKKLLESQSNMTISHITSDPCLMSPCQNGATCNKNI
YISQEVAVLESMAVIFVSPRKEIFNCTCSVGFSGSLCEDDIDECEANPCQNNSTCENTAG
SFRCHCLSGFSGSVCSADVDECLKVKCQNGGTCIQSQEGYHCQCAPGFDGERCEQLKDHC
RSTPCFQGSCINLQTGFLCICPFGVSGVHCEEISYGFEEMSFVEFPPLDRRTNLIYFEFA
TVQRDSLLLYNLGILSRREFFALEILDSRVQLSYDLGSGPVKLQTHKQVADGHFHSVTVR
RIGNLGTLLVDNCTDVVNNGFCFSEFDGTISERTLDVGNTNMTFGGLRSLEVILQHPSHI
KTHDFVGCIRNIQINGILLRPSSGLATYNVFNRCPRTALSGCNSSPCKNGGVCHDLWSEY
VCECKNPFRGRNCDTEISEELVLHFKGTDYIEYVIKERFKRDLLLQELKDGAKQENTKVQ
TLITVKFKTKEDGTLLFVLGKGHIVLMVRDGQPVYSSTDLLGHMSEFTVELLVADGLWHI
LSLLTNERNNSLYVDDKMVLNITQQNMDLRLFSLEKIILGAAPPRQRTFQQSGFSGCVEY
LNVSGHTLPVSGHSLMVEVWPSSTLPQSSCSSSGVCLFSPCSEDTAYLRTCLSDCQNRRP
CRPAIQDRPCMCLQNVSNHFCDICISTVNDECSEKQYNRPFWIIAVVLPLISILVIVCMF
VVLYRLKQQDSVVKNENLTHETEQETENTTICFNGNQVSKAELSTSKGKRFDRISPCQSN
EKLNSYGQLMLPSELEYYKIGSICSAFNSDNNSPRLSWHKHFCSTKRLKNDSNQWGDLRR
LLGNLKNDNPGEQKCPPKHQNISSFHKQSLCQPDAEQQRQNMSCCTKEFPQPELLEPTQP
LSFEEISKLNNPLEPVFSHQALLKPGPLESTMTTETSSDCETDSTFTCSESDNDHFNIIT
GKKCRDEQPCPSECRISQDVFKLTSVSTLSQDISKTDSFTMFEQWEKNVNVPLTFGSYAA
VFEDIAAMPIDFSLCSDILSDEEEII
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcacgatgtgccatttgctattgaggaaacatttggagaactgcttaccact
gatttcttggacagagaaactgtagccttttacactctgacagtgattggcatggatatg
catcccacacaaccgctgtcaagctctgtacttgttactgtcctggttggtgatatcaat
gatcactggcctcagtttctggacagtccctttgtggcttatgtgcccacagagtttcct
ccaggctcagttgtttgtgcagtgagagcaatcgatggagacaccgacatgaatgcagag
ctgcattactctctgtatggacaaagttcagacctgttttcgattgatccgaacagcggc
actgtattcacttcaagcctactgcagagcacagatgattttgtcatcaatgtgtatgta
gaagatgctggagaaaacccaaaatttgacatcactacgatcagtatcaggtttcacaac
atttcagacttcccagagatgaatgtggatgttctgagttattctctctttgaggacgag
ccagtgggaacagtagtagctgttatttctgcgtcaagcatcagagctgaacctgtctct
ttttatcttgcttctggaaactttgaagagatgttccatctagaccaattaggtggagca
ctgacagttgagaacccactggattatgaaagcaaaaaggaattttctttgttgatagaa
gccagagactctgcagagattgctgttccctatgacctgttggtgggaactgaagtggcc
atgtttactgcaacagatctagatgtcaatagcagtgattatattgagtatagcatcagt
ggaggaacagacatagttgagacgttggtcaatattaatgtgattgagactaatgatgca
cccttgttcacctccacatggtacgaggcagatgttaaagaagacacaccaactgggaca
tctgtgttaactgtaagtgctttggaccaggactctgtattggattggaatcaattcatc
tttaggattgtagacggaaacataaactcctctttctccatcgatccacttaatggcatt
gtgttagtaaactctgatcttgacagggaacgctggccagtttacaatctcactgtaaca
gccactgatcatggttctccccccgccactgggacaacaaatgtcattgtgaatatactt
gatattaatgacaatgcccctcaacttgtgacaaacaagattcaagtgaaggaaaatcaa
cccgaaggagccatagttgccagattaaatgcatttgattttgatttacctccaaatcaa
ggtccttttactttttggctgtcgaatttgtcaacagaaagtgctttttttctcactcca
gatggagttttactcaccagacgtgttgttgatcgggagcatgtctctgaatatcgatta
ctggtggtggtaaaagatgcagggtttcctctatcactgtcttcaacaacaacactccac
attacggtggaagatgaaaacgataacccaccattaccacgaaacatctttattgaggtg
aaatattttggcagttcttttaatggtggcatgattggtaatgtgcatcctgaggatcat
gatgagtctgatgcattcctgtgttccattataagtggcccgattaacatgttcatgata
cccaatggtacatgtgagctatggtcatctccttttcaaggcgaagccacattcaatgtc
acagtcgaagctacagatcaagttcattttcctgtaaataacagtatctatgtgaactac
aaaggttttacaaatgcatctgtggatagttgtatatttttctacgtggcctcacattca
atggaaatcttcttgactaataggtatttgcggtttgtgaaagccttggatagtctgttt
aacctgcaggcctcaaagactcatgtttttggaatcaaacatattggcatggagatacta
ctacttgctgcagtgaaaaactacaatggacaatatctaagcagagaggtagcgagtagt
atatctgttggacataagaagttactggagtcccaaagcaatatgacaatttctcacatc
accagtgatccatgcctcatgagcccctgtcagaatggggccacatgcaacaaaaacatt
tacatcagccaggaggttgctgtcctggaaagcatggctgtcatctttgtgtcgccacgg
aaagagatttttaattgtacctgttcggtcgggttcagtggttcactctgtgaagatgac
attgatgaatgcgaggcgaatccttgtcagaacaacagtacatgtgaaaacaccgcagga
agtttccgctgtcactgtctgagtggcttctctggctcagtctgctcagctgatgtggat
gagtgcctgaaggtgaaatgccaaaatggtgggacatgcattcagtcacaggagggatac
cactgccagtgtgcgcctggatttgatggagaaaggtgtgaacagctcaaagatcactgc
agatctacaccatgttttcagggaagctgcattaacctgcaaacaggattcctctgtatc
tgtccttttggagtcagtggtgtccattgtgaggaaatcagttatggctttgaagaaatg
tcctttgtggagtttcccccactggatcgcaggactaatttaatttattttgagtttgcg
acagtgcagagggactccctactcctgtacaatttaggaatattatccaggagggaattt
tttgcactggagatacttgacagcagagtacagctctcttatgaccttggctccggacct
gtaaagttgcagacccataagcaagttgcagatggacattttcacagcgttactgtcaga
agaattggcaatttggggactttgcttgtggacaactgcacagatgttgtgaacaatgga
ttttgtttttcagagtttgatggcactatttcagaaaggactcttgacgttggaaacaca
aatatgacatttggtggactgagaagtctggaagtaatattgcaacatccaagtcatata
aaaacacatgactttgttgggtgcattcgaaatattcagattaatggcatcttgctgaga
ccttcttctggccttgcaacatataatgttttcaacaggtgtcctcgaacagcattgtca
ggatgcaacagctccccatgcaagaatgggggagtgtgccatgacctttggtctgaatat
gtttgtgagtgcaaaaatccctttagaggaagaaactgtgatacagaaatatctgaagaa
cttgtattgcacttcaaggggactgattacattgagtatgtcattaaggagagatttaaa
agagatcttctgcttcaagaactgaaggatggtgcaaaacaggaaaacacaaaagtccaa
actctcattactgtcaagttcaaaacaaaagaagatggaaccctgctctttgttctagga
aaaggacatattgtgttgatggtaagagacggacaacctgtgtactcttctactgatctg
ttaggacatatgtcagagtttacagtggagctgttagttgctgatggtctttggcacatc
ctgtccttattgaccaatgagcgtaacaattcactgtatgttgatgacaaaatggtcttg
aacattacccaacaaaacatggacttaagactttttagtttggaaaagattattcttggg
gctgccccaccaagacaaagaacgttccaacagtcaggatttagcggatgtgtggagtat
ctgaacgtgagtggtcatactctgcctgtcagtggacacagtttaatggtggaggtatgg
ccgagctcgactctcccacagtccagctgcagctcttcaggtgtctgcctcttctcacca
tgcagtgaagacaccgcctatttgagaacatgtctttcagactgccagaaccggaggccg
tgcagacctgcaatacaggacaggccatgcatgtgtctgcagaatgtctccaatcatttt
tgtgacatctgcatttccactgtcaacgacgagtgctcagagaaacagtacaacaggcct
ttttggatcatagcggtggttctccctctgatctccatcctggtgattgtatgtatgttt
gtagttctgtacagactgaaacagcaggattcagttgttaaaaatgagaaccttacacat
gaaactgagcaagaaactgaaaacacaacaatttgtttcaatggcaatcaggtgtctaaa
gctgaactttcaacctcaaaagggaaacgttttgatcgaataagtccatgtcagtcaaat
gagaagcttaatagttatgggcagctgatgcttccaagtgagctggagtattacaagatc
ggcagcatctgtagtgcatttaattctgacaacaactcaccaagactcagctggcacaaa
catttttgtagtacaaaacgtcttaaaaatgattcaaaccagtggggggatctgaggagg
ttgctaggtaatttaaagaatgacaatcctggtgaacagaaatgccctccaaagcatcaa
aatatttcctcatttcacaaacagtcattgtgtcagcctgatgcagagcagcagaggcag
aatatgtcctgttgtacaaaagaattcccacagccagagctcctggagccaacacagcca
cttagttttgaagaaattagcaaactgaacaatcctcttgagccagttttttcacatcaa
gcgcttttaaagcctgggcccctagagtccactatgacaacagagacctcatctgactgt
gaaacagacagcacgtttacttgctctgagtctgacaatgaccactttaacatcattact
ggcaaaaaatgtagggatgagcagccatgcccatcagagtgcagaataagccaggatgtc
tttaaactaacgtccgtctccactttaagtcaggatatttccaagacggattcctttact
atgttcgaacaatgggaaaaaaatgtaaatgtgcccctgactttcggaagctacgctgca
gtgtttgaggacattgcagccatgcccatagacttcagtctttgcagtgatatactaagt
gatgaggaagaaattatttga
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integrated database retrieval system
