Poeciliopsis prolifica (blackstripe livebearer): 129359597
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Entry
129359597 CDS
T09758
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129359597 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129359597 (msh6)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129359597 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
PspAA
Motif
Other DBs
NCBI-GeneID:
129359597
NCBI-ProteinID:
XP_054885314
LinkDB
All DBs
Position
Unknown
AA seq
1377 aa
AA seq
DB search
MAKQSSLFNFFTKSPPTVSKPKQSSSPAEADLPSSVEKSSSSPKEEARQTQSNQQQQQPS
KNTKVKQNKTASGGFKKLFGDKAATTENSSKCSFGAGALVWAKLEGHPWWPCMVVPQPLT
GQQMRGKGRDQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDVQPGGAFFSSKPMIRRAM
ELADKSFFDSPEKRLKMPVCRDPSDEEEEDEEEEMELDKSTVSDEEVSDMDEKKSKEAKS
SKVGRRSSRSSAEQGGKSKRRRIIVASDSDGSDEEFKPEQAASTSEEEEEEATVSSEEEE
KESSQESEADSPIKPVKRKRPADKSVSKKAKMPSTPSAGPKRAPKTITAEAKSRLSAFSA
PDSFESQANGSGPTGGATIWDHEKLEWLQDGRRKDGKRRRQSEDDYDPTTLYVPEDFLNR
NTPGMRRWWQLKSGMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIG
FARFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRGTQTYS
VLDGAPSESQSKFLLSLKEKAEDESSGRHRSYGVCFADTSVGYFHIGQFSDDRHCSRLRT
LIAHFPPAEVLFEKSNPSTETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEENYFE
ETAGDGFLPDLLRRMTSETDSLCLSPKEGYELALSALGGCIFYLKKCLVDKELLSMANFE
EYVPVDVELEKAAGPASFFSQTRQRMVLDGVTLANLEIFQNASGGTEGTLLERLDSCSTP
FGKRLLKQWVCAPLCNPTSIRDRLDAMDDLIAAQAQAADVSELLKKLPDLERLLSKIHSI
GTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISTFTPASGDFRSTLLR
QIVTLKTEEEGLFPDLSAELKRWETAFDHQKACTTGVITPKTGFDPEFDQALAGIKACER
DLQDYLERQKKRLGCKNMAYWGTGRNRFQMEVPDSVSERNIPEEYEVKSTKKGWKRYVTK
ESERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYRDWRTAVECMAVLDVLLALSRYSLG
GDGPMARPQVVLPEDDDRGTPFINLIGSRHPCVTKTFFGDDFIPNDVFVGCPGSSEGDEV
EGHASCVLITGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLCFTPVDRVFTRLGASDRI
MAGESTFYVELSETASILHHATRHSLVLLDELGRGTATYDGTAIASAVVKELAEKICCRT
LFSTHYHSLVEDYANNAAVRLGHMACMVENECEDPSQETITFLYKFIAGACPKSYGFNAA
RLANLPEEVIQSGHRKATEFEKSTIRLRLFRKLCQLAEDAAPDNARFTSLVQLLNTL
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagagctctctgttcaactttttcaccaagtcgccgccgacggtttccaaa
ccgaagcagagttcctccccggccgaggcggacctgccgagctccgtggaaaagtccagc
tcttctcccaaggaggaggcgagacagacgcaaagcaaccagcagcagcagcagccgagt
aagaacaccaaagttaaacagaacaagaccgcaagcggaggattcaagaagctgttcgga
gacaaggccgcgacgactgaaaacagctccaaatgctcatttggtgctggagccctagtg
tgggccaaactggaaggacacccctggtggccatgcatggtggtacctcaacctctgaca
ggccagcaaatgaggggcaaaggtcgggatcagcgcatacatgtccatttctttgatgaa
cctccaactagaggatgggtcagcaccaaatacattagagagtaccaagggtctgacagc
agtgatgttcaaccggggggggcgttcttcagcagcaaacctatgatccgtcgtgcaatg
gagcttgctgataaatcttttttcgatagtcctgagaaacgactaaaaatgccggtctgc
agggatccatctgatgaggaagaggaggatgaagaagaagaaatggagcttgacaagtca
acagtgagtgatgaagaggtcagtgacatggacgaaaagaaaagcaaagaagcgaagtcg
tccaaagtcggtcgacgttcttcgcgatcctccgcagagcaaggaggcaaatctaagcgc
cgccgcatcatcgtggcctcagacagcgacggatcagacgaggagttcaaaccagagcaa
gctgcatccaccagcgaggaagaggaggaagaggcgaccgtgagcagtgaagaggaggag
aaggagagcagccaagaatcggaagcagacagcccgatcaaacctgtgaagcgcaaacgt
cccgcagataaatccgttagtaagaaagcaaagatgccgtctacgccctcagctggacct
aaacgagctccaaaaacgatcacagctgaagccaaatcccgcttgtctgccttctcggcc
ccagacagctttgagagccaagcaaacggatccggtcctaccggaggggcgacaatctgg
gatcatgagaagctggaatggctgcaggacggtcgtaggaaggacgggaagagacgccgt
cagagtgaggacgactacgacccgaccaccctgtacgtacccgaagacttcctgaacaga
aacactcctgggatgcgtcgctggtggcagctgaagtctgggatgtttgacactgtgatt
ttctacaaggtgggaaagttttacgagttgtaccacatggacgccgtgattggtgtcaac
gagcttggcctgacgttcatgaaaggcacgtgggcgcactctggcttcccggaaattggc
tttgcgcgtttttcagacgtgttggtgcagaagggctacaaggtggcccgcgtggagcaa
acagagaccccggaaatgatggaagcacgctgcaagaccatggccaagcccacgaagttt
gaccgcgttgtcagaagggaagtctgccgaattatcacccgcggtacccaaacctacagt
gtgttggacggcgctccttcagagagccagagcaagttcctcctgagcttaaaggaaaag
gctgaagacgagagctctggacgccatcgctcctatggcgtttgcttcgcagacacatca
gtgggatattttcacattggtcagttctcagatgatcgccactgctcacggctacgcacc
ttaattgcacacttcccccctgctgaggttctctttgaaaagagtaacccgtctaccgag
acccgcaaaatcttgaaggcgtctctgtcctccgcgctgcaggaagggttgaacgcaggg
acacagttttgggatgctcagaagacgctgaaaaccctctcagaggagaattactttgag
gagacggctggagacggattcctccctgatctcctgcggaggatgacctcggagactgac
tccttgtgtctgtctcctaaggaaggctatgaattggcgctgtcggctttaggcggctgc
atcttctacctgaagaaatgtctggtcgacaaagagctgctctccatggccaacttcgaa
gagtacgtccctgttgatgtggagttagagaaagctgctggacccgccagttttttctcc
cagacccgtcagcggatggttctggacggtgtgacactggcgaacctggagatcttccag
aacgcctcagggggaaccgaagggacgctgttggagcgtttagactcctgctctactccg
tttggtaagaggctgctgaagcagtgggtctgtgctccgttgtgtaaccccacctccatc
agggacaggctggacgccatggacgacctgattgcagcgcaggctcaggccgccgacgtc
tcagagctgctgaagaagcttccggatctggaacggcttctgagtaaaatccacagcatt
ggcacccctctgaagggccaggaccacccggactccagagcggtgctctatgaggaagtc
acctacagcaagcgcaagattgccgacttcctgtcagctctagaaggcttcaaaaccatg
caagagatcatttctactttcactccggcttcaggcgactttcgctccacgctgcttcgt
cagattgtcaccctgaagacggaagaggaaggcctcttcccagatctgtcggcagagctg
aagcgctgggaaacagctttcgaccaccagaaagcctgcaccactggggtcataaccccg
aagaccggctttgatccggagttcgaccaggctctcgcaggaatcaaagcctgcgaacgg
gatctgcaggactacctggagcggcagaagaagaggctcggctgtaagaacatggcatac
tggggaaccgggcggaaccgctttcagatggaagttcctgacagtgtttcagagaggaac
atccctgaagagtatgaagtgaaatccaccaagaaaggctggaagcgctacgtgacaaag
gaaagtgagcggctcttctcagagctgcagggatttgaggagaagagagacgcagcgctg
aaggactgcatgaggaggctcttctacaactttgacaagaactacagagactggaggaca
gctgtggaatgcatggccgtactggatgttctgctggctttgtcccgctacagcctgggt
ggggacgggccgatggccagaccccaggtagtcctaccagaggacgatgaccgcggcacg
cccttcattaacctcattggttcccgtcacccgtgtgtgactaaaacgttttttggggat
gacttcattcctaacgacgtcttcgtcggttgccctgggagcagtgaaggtgatgaggta
gaaggtcatgcttcatgtgtccttataacagggccaaacatgggggggaaatccacccta
atgagacagtgtggacttgtgattatcctagctcagctcggatgctacgttccagctgag
agcctttgctttactccagtcgatcgggtcttcactcggctgggagcatcggatcgaatt
atggccggggagagcaccttctatgtggagctcagtgagacggccagcatcctgcaccac
gccaccaggcactctctggtgctccttgatgaactcggaaggggcacggcaacatacgac
ggcacagccatcgccagcgctgttgtgaaggagctggctgagaagatctgctgtcgcact
ctgttctccacgcattaccactccctagtggaggactatgctaacaacgccgctgtgcga
ctcggtcacatggcatgcatggtggagaacgaatgtgaggatccaagtcaggaaacgatc
acattcctctacaagttcatcgctggtgcttgtccgaagagctacggcttcaacgcggcg
cggctcgccaacctgccagaggaggtcatccagtctggacacaggaaggccacagagttt
gagaaaagcaccatcagactcagactattcaggaaactctgccagttggctgaagatgct
gctccagacaacgcacgcttcacttcactcgttcaactgcttaacaccctgtag
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