Poeciliopsis prolifica (blackstripe livebearer): 129360391
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Entry
129360391 CDS
T09758
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129360391 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprl03000
]
129360391 (cnot4a)
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129360391 (cnot4a)
04121 Ubiquitin system [BR:
pprl04121
]
129360391 (cnot4a)
Enzymes [BR:
pprl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129360391 (cnot4a)
Transcription factors [BR:
pprl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129360391 (cnot4a)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129360391 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129360391 (cnot4a)
Ubiquitin system [BR:
pprl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129360391 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
DZR_2
Rtf2
RDD1
zf-CCCH_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
129360391
NCBI-ProteinID:
XP_054886546
LinkDB
All DBs
Position
Unknown
AA seq
801 aa
AA seq
DB search
MSHSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPGFLQPPACGTEKSKSKPNSTQRTNSSNGKEGWPTLSGHNKLANGLSEDRKS
PPLLDYLDQEASNSDGLESELGPGQRPTLSPFSSNCDSNSPNDKPPESIGLVNGETLQQM
PTSDSPSPPPGLTKPILVVPISMSDLSARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLP
PFPSSSRGSSDWPMTPEPQILFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQSPSSPGPLAQGSGHSSGLPPSNLSTSHHFPGGLPRVHPLHHRA
IYSSFSFPGGHNSQAGQQQQQQPPATRHPWMGIPTRNNLAHLNHSASAASHSNILDLNLP
PQHNTGLGGIPISENSSSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSV
NHIGGPTGPAGISHSLSWDSTASWMDPAIITGIPASAGSSLDCLQDENPPHWLKSLQALT
EMDGPASSAVPAPPQPLHSGLLDGHLPLHHRAPSGWAPYLPPPTANPTGQFHSPPPGFQT
AFRPPGQPATELLQSAAVDRH
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgaaatgaaggacgaccccatggagtgccctctgtgcatggagccg
ctggagattgatgacgtcaatttcttcccctgcacttgtggctaccagatctgccgtttc
tgttggcaccgcatccgcacagacgagaacggcctctgccccgcctgcagaaagccgtac
ccagaggaccccgccgtgtacaagcctctgtcacaggaggaaatccaaaggataaagaat
gaaaagaagcagaaacaaaacgagaaaaagcagaaggtgacagaaaatcgcaagcatctg
gcgagtgtcagagtggtccagaggaacctggtgtttgttgtggggctgtcgcagcggctc
gctgatcctgaagtcctaaaacgaccagagtattttggccgatttgggaaaatccataaa
gtggtcatcaacaacagcacatcgtacgcaggttcacaggggcccagtgccagcgcttat
gtcacttacatccgttccgaagacgctttaagagcaatacagtgtgtgaacaatgtggtc
gtcgacgggagaacactcaaggcttctttaggcacaacaaaatactgcagttacttcctt
aaaagtatgcaatgtcccaaacctgattgtatgtatctacatgagttgggggatgaagca
gctagctttactaaagaggagatgcaggcggggaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaataaatcctggttttctacaacctccagcttgtggaacagaa
aagtcaaagagtaaacccaactccacacagagaacaaacagtagcaacggtaaagaaggc
tggccgacgctgtcggggcacaacaaactggccaacggactttcagaagaccgcaagtcc
cctccgctgttagactatctagaccaggaagctagtaattcagatgggctagaatcagag
ctgggtccaggccagcgtcccaccctatcccccttctcctccaactgtgacagtaatagt
cccaatgacaaacctccagaatccattggtttggtcaatggagaaactttacaacagatg
cccacaagtgactccccttcccctcccccgggtctaacgaaacccatcctggtggtgccc
atcagcatgtcggacctctcggcccgttcaccctttgagggtgctgcggcagagtcccag
tcacttttttcagacaacagcaacttcagacatccaaaccctctccctgccggcctgccc
cccttccccagctcctcccgcggcagttccgactggcccatgacaccagaaccacagata
ctcttcacatcagacacaataccagtgtcttcctcaacagactggcaagcggccttcggt
ttcggctcctccagcaaacagcaggacgacgatctgggcttcgaccccttcgacgtcacc
cgcaaggctctggccgacctgatagagaaggagctatcggttcaggatcagagcccctcg
tctcccgggccgctcgcacaggggagcggtcacagttcgggtctgccgccgtccaatctc
agcacatcccaccacttccccgggggcctgccgcgcgtccacccactccaccacagagcc
atctacagctccttcagtttcccgggcggccacaacagtcaggccggtcagcagcagcag
cagcagccccccgccaccagacatccctggatgggcatccccacacgaaataaccttgca
cacttgaaccactcagccagtgctgcctcacacagtaacatcctggacctgaatctgccc
cctcagcacaacacagggctgggagggatccccatctcagaaaacagcagctctatagac
ggcttaaatgtgaaagagtggcaggatggactgagagctctcctgcccaacatcaatatc
aactttggtggcctccccaactcctcctcctcttcttcttcctcatcctccaacagtgtt
aaccacatcggcgggccaacggggccggcaggcatttcacacagcctcagctgggacagc
acagccagttggatggatcctgctatcatcacaggcatccccgcctcggccggcagcagt
ttagactgtctccaagacgagaacccgccacactggctcaagtccctgcaggcgctaaca
gagatggacggtcctgccagctccgcggtgcccgcccccccacagcccctccacagcggc
cttctcgacggccacctccccctccaccacagagcccccagcggctgggctccctacctg
ccccctcccacagccaaccccactggtcagttccactcccctccaccaggcttccagacc
gccttcagacccccaggacagcccgccacagagctactacagagtgccgccgtggatcgc
cactga
DBGET
integrated database retrieval system
