Poeciliopsis prolifica (blackstripe livebearer): 129360940
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Entry
129360940 CDS
T09758
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129360940 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129360940 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129360940 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129360940 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129360940 (col4a2)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129360940 (col4a2)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129360940 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129360940
NCBI-ProteinID:
XP_054887445
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
MQRQQDREHTNLRVLLLCLFLAALASTVQAGGKKHSGPCGGRDCSGGCKCFPEKGARGLS
GPLGPQGPQGPPGRPGDPGIQGHKGQKGDQGSGGFIGPKGSTGMTGVPGFSGNDGIPGHP
GQAGSRGKPGADGCNGTKGEPGFPGLPGFIGGPGNPGLKGRKGEKGDSLDVRIYMERFRG
DPGRPGEDGFPGPPGPQGQEGSRGPLGPKGPPGPPGPRGPKGTMTKVLKGVKGETGDIGP
QGPPGNYTTQQRQPITGPSGFPGDKGERGDLADNLDGKGETGIMGMPGSRGESGADGPPG
QKGEPGYPGLKGRTGPKGGIGDPGELISSGFPWSAGGLPGPRGETGPDGERGQIGDQGRP
GPPGRPISDTQQQIWDFFGPFGVKGGKGDKGLPGDQGRPAVFPGPKGSDGSPGSRGPPGP
RGSWKEFFKGDAGPRGRPGNAGAKGFKGDHGECQCSGENFRRGLPGPAGEHGDPGMTGEF
GYEGDMGDQGSRGANGIPGSAGLKGFPGPKGRKGETSVAREKGYAGDPGDPGDPGDPGID
GVVGSHGSPGPNGLHGRPGNRGPPGEGPWGERGDKGFPGWPGRPGSAGLVGTPGVNLVGI
KGQRGPPGDDGLAGYDGVQGTPGSPGDCIPHGAGGQVDVTGSDCDPVPGPPGLPGPSGLS
GIPGSPGVPGPRGFSGLQGVNGEKGEQGERGRGGTPGPRGFPGPRGDLGTPGSKGSLGNP
GVPGMPGRYGSQGEKGAHGEVMGASPGPPGDPGLPGLRGQKGQLGDQGQPGFSGVDGMPG
MIGFRGLKGTPGLPGEEGRPGPAGTYGFPGDPGRSGPPGPAGTTGEPGRSGERGTEGDPG
PPGPIGLKGMPGAYGDDGAIGARGLPGDPGEPGATGRPGLQGLKGVKGSHGTSGFEGVKG
NTGLKGFEGQKGGPGTPGEVGLKGFSGAKGARGEQGLQGKPGVMSPKMLIHVKGAKGDHG
HQGIPGFTGPRGTKGYQGVPGYDGAHGLPGDPSNEKGVHGDPGAQGLPGVKGMPGTPGNR
GIQGFDGMHGDKGGKGSPGAYGHSGVKGKKGGKGEKGIRVDLPGSPGLRGEDGFTGEPGL
KGLLGPIGDIGITGFDGIEGVKGQAGDLGIGGYPGLDGQKGTPGNQGQKGFPGIPGEDGL
PGFPGFSGSKGFPGLQGLYGLDGLKGQKGLSGTPGLDSIGPAGETGVKGRKGESGVPNSQ
PGSPGSSGLKGFQGNLGDFGQPGLPGLRGLQGPGGIPDIPGKRGDPGFPGPRGSQGYPGR
SGPPGLDAFPGEKGVPGENGFPGPTGKRGSQGDSGPAGYRGPDGISGKKGPKGDQGHMGI
PGQTGLPGERGPVGPKGDTGFPGYPGAPGSPGRPPPSIKIPGERGFPGLRGIQGPKGISG
VSGPRGPPGDPGFMGPVGLKGMPGISGTPGVPGYRGEVGNVGHPGLQGMEGQRGRPGGPG
LPGMAGRSISVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSC
LPRFSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEKEIQPYISRCSVCEAPS
VAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIE
CNGAKGTCHYFANKHSFWLTSIDQSFHTQPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcagcaggacagagagcacacaaatctgagggtgctgctgctctgcctcttc
ctcgccgccctcgcctcgacagtgcaggctggtgggaagaagcacagtggcccatgtggg
ggaagagactgcagcggtggttgtaaatgctttccagagaagggtgccaggggtctttca
gggcctcttggtcctcagggcccacaggggcctcccgggcgaccaggggatcctggtatt
caaggacacaaggggcagaaaggtgaccaaggatctggtggcttcatagggccaaaaggc
agcacgggaatgactggtgtacctgggttctctgggaacgacggcatccctggccaccca
ggacaagctgggtccagagggaaacctggtgcagacggctgtaacgggaccaaaggagaa
cctggattcccaggattacctggttttatcgggggccctggaaatcccggtctaaaaggc
aggaagggagagaaaggggattctctggacgtcagaatttacatggagcgcttcagggga
gatccagggagaccgggagaggacggatttccggggcctccaggaccacaaggacaagaa
ggtagcagaggccctctaggaccaaagggtcctccaggtcctccagggccgcgtggacca
aagggcaccatgaccaaagtgttgaagggagtcaaaggagaaacaggggacatcggacca
cagggcccaccaggaaactacacaactcagcaacgtcaacctatcactggaccctctgga
ttcccaggtgacaaaggagaaagaggagatctggcagacaacttagatggcaaaggagaa
accggtataatgggaatgcctggctctcggggcgaaagtggtgcagatggacctccgggt
caaaagggtgagcctggttatccagggctgaaaggcagaaccgggccaaagggaggcata
ggtgatccaggggagctaatttcatcaggatttccctggtctgcgggtggtcttcctggg
ccccgtggtgagacgggtccagatggagagaggggtcagatcggagaccaaggcagaccc
ggaccacctggacgtcccatctctgacacacagcaacaaatttgggatttcttcggccct
tttggtgtaaagggggggaaaggagacaagggtctaccgggagaccaaggaagacctgct
gtctttccgggacccaaaggatctgatggaagtccggggagcagaggccctccaggaccc
agaggatcatggaaagagttctttaaaggagatgcagggccaaggggaagacctggcaat
gcaggggctaaaggatttaaaggggatcatggagaatgtcagtgcagtggtgaaaatttc
cgccgcggtttacctggtcctgccggtgagcacggagatcctgggatgactggagagttc
ggatacgaaggagacatgggagaccagggtagcagaggcgccaatgggattcctggatct
gccggcctcaagggttttccagggcccaaaggacgaaaaggagaaacaagtgttgcgaga
gaaaaaggatacgctggagatcctggagatcctggagatcctggagaccccgggattgat
ggagtggtaggatcacacggttctccaggcccaaatggtcttcatggtcgccctggtaac
cgcggtcctccaggcgaaggaccctggggagagcgtggagacaaagggttccccggatgg
cccggtagacctggttctgctgggttagtggggacaccaggtgtaaaccttgtaggtatc
aaaggacaacgtggtccacccggtgatgacggcctcgcaggctatgacggagttcaggga
acacctggaagtcccggcgactgtattccacatggagctggaggacaggtggatgtgaca
ggtagtgattgtgaccctgtcccgggtcctcctggtctgcctggaccttctggactcagt
ggaataccaggttctccaggagttcctggcccaagaggtttctcaggtctgcaaggagtc
aatggagagaaaggagaacaaggagagcgcggcagaggcggcacccctggaccacgaggt
tttcctggtccacgtggagacttggggactcctggcagtaaaggctctttagggaatcct
ggtgttccgggtatgcctggccgatatggatctcaaggggaaaaaggtgctcatggagaa
gtaatgggagcatcgcctggccctccaggtgacccaggactacctggcctgcgagggcaa
aagggccaacttggagatcaagggcagccagggttttcaggagttgacgggatgcctggc
atgatcggcttcaggggactgaaaggcaccccaggcctgccaggggaggagggaagaccc
gggccagctgggacgtacggcttccctggggatcctggcagatcaggcccacctggtccg
gcagggacaactggagagccaggaagatctggagagagaggaacagaaggggacccaggt
cctccaggtccaataggattaaaaggaatgccaggtgcttatggagatgacggtgcgatt
ggagcgcgtggcctgccaggtgaccctggagaaccaggtgcaaccggacgaccaggcctt
caaggactcaaaggagtaaaaggtagtcatggaacgtctggttttgagggagtcaaaggg
aatactggtctgaagggctttgagggacaaaaggggggacctggaacgcctggagaagtt
ggcctgaaaggattctcaggagcaaagggagcgagaggcgaacaaggtctgcaaggtaaa
cctggggtgatgtcaccaaaaatgcttatccatgtcaagggagccaaaggagaccacgga
caccagggcattccgggtttcaccggaccaagaggtaccaaaggttaccaaggtgtgcca
ggctatgatggagctcacggtcttccaggggaccccagcaatgaaaaaggagttcatgga
gatccaggtgcacagggcctgccaggcgtcaagggaatgccagggacacctggaaacaga
ggcattcaaggcttcgacggaatgcatggcgacaaagggggcaaaggaagccctggtgcc
tacggtcattcaggagtgaaaggaaagaaaggaggaaaaggtgagaagggcattcgagtg
gaccttccaggatctccaggattgagaggcgaggacgggtttacaggagaaccaggtctg
aaaggtctacttggaccaatcggggacattggtataaccggatttgacggtattgaaggg
gtaaagggacaagccggggatctggggattggaggatacccagggttggatgggcagaaa
ggaactccggggaaccaaggtcaaaagggttttcctggaattcccggggaagatggacta
ccaggctttcctggcttctctggaagcaaaggtttccccggcttacagggtctttatgga
ttagatggactgaaaggacagaaaggtctctcaggaacaccaggtctggacagtattgga
cctgctggagaaactggcgttaaaggaagaaaaggagaaagtggtgttcccaacagccag
ccaggttctccaggttcatcaggactgaaaggcttccagggaaatctgggtgactttggc
caacctggactgccaggactacgtggccttcagggaccaggtgggatcccagacataccg
ggaaagaggggggatcctggcttcccaggacctcgaggatcccaaggttatcctggacga
agtggaccccctggattggacgctttcccaggagagaaaggcgtaccaggcgaaaatggg
ttccccggccctactggtaagagaggatctcaaggagattcaggtccagcaggctacagg
ggccctgatggaatctctgggaagaaaggaccaaaaggagaccaaggtcacatgggaatt
cctggacagactggcttaccgggagagagaggaccagtgggtccgaaaggagacactgga
tttccaggttatcctggagcgcctggcagcccgggccgtcctccgccttccattaaaatc
ccaggagaaagaggctttccaggtctgcggggtatccaaggcccgaaagggatttcaggg
gtgtcaggacctcgaggcccacctggagatccagggttcatgggacctgttggacttaaa
ggcatgcctgggattagtggtactccaggagtgccaggttaccgcggcgaggtgggcaat
gtggggcaccccggtctccaaggcatggaaggtcaaagaggcaggcccggcgggccagga
ttacctggcatggcgggccgcagtatcagcgtgggctacctgctggtgaaacacagtcag
tcagaacagacgcccatgtgtccggtgggaatgtctaaactgtgggacggttacagtctg
ctgtacctggagggccaagagaaggcccacaaccaggacctcggtttggctggttcctgt
ctcccacggttcagcaccatgccctttctgtactgcaaccctggggacatttgctactac
gccagcagaaacgacaagtcctactggctgtcaaccactgctcccctccccatgatgcct
gtcgaagaaaaggaaatccagccgtacatcagccgttgctcggtttgcgaggctccatca
gttgctattgcggttcacagtcaggacatcactatcccacagtgtcccgtgggctggagg
agcctgtggattggctactccttcctcatgcacacggcagcaggaaacgaaggcggcggt
cagtccctgtcatcgcccggctcctgcctggaggacttccgcacaacgccgttcattgag
tgtaatggagccaagggcacatgccactactttgctaacaaacacagcttctggctgaca
tccatagaccagtcattccatactcagccatcatcggagacactaaaagcaggccagctc
ctttcacgcatcagtcgctgtcaggtctgcatgaagaacttgtga
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integrated database retrieval system
