Poeciliopsis prolifica (blackstripe livebearer): 129360940
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Entry
129360940 CDS
T09758
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04382
Cornified envelope formation
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129360940 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129360940 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129360940 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129360940 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129360940 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129360940 (col4a2)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129360940 (col4a2)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129360940 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129360940
NCBI-ProteinID:
XP_054887445
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
MQRQQDREHTNLRVLLLCLFLAALASTVQAGGKKHSGPCGGRDCSGGCKCFPEKGARGLS
GPLGPQGPQGPPGRPGDPGIQGHKGQKGDQGSGGFIGPKGSTGMTGVPGFSGNDGIPGHP
GQAGSRGKPGADGCNGTKGEPGFPGLPGFIGGPGNPGLKGRKGEKGDSLDVRIYMERFRG
DPGRPGEDGFPGPPGPQGQEGSRGPLGPKGPPGPPGPRGPKGTMTKVLKGVKGETGDIGP
QGPPGNYTTQQRQPITGPSGFPGDKGERGDLADNLDGKGETGIMGMPGSRGESGADGPPG
QKGEPGYPGLKGRTGPKGGIGDPGELISSGFPWSAGGLPGPRGETGPDGERGQIGDQGRP
GPPGRPISDTQQQIWDFFGPFGVKGGKGDKGLPGDQGRPAVFPGPKGSDGSPGSRGPPGP
RGSWKEFFKGDAGPRGRPGNAGAKGFKGDHGECQCSGENFRRGLPGPAGEHGDPGMTGEF
GYEGDMGDQGSRGANGIPGSAGLKGFPGPKGRKGETSVAREKGYAGDPGDPGDPGDPGID
GVVGSHGSPGPNGLHGRPGNRGPPGEGPWGERGDKGFPGWPGRPGSAGLVGTPGVNLVGI
KGQRGPPGDDGLAGYDGVQGTPGSPGDCIPHGAGGQVDVTGSDCDPVPGPPGLPGPSGLS
GIPGSPGVPGPRGFSGLQGVNGEKGEQGERGRGGTPGPRGFPGPRGDLGTPGSKGSLGNP
GVPGMPGRYGSQGEKGAHGEVMGASPGPPGDPGLPGLRGQKGQLGDQGQPGFSGVDGMPG
MIGFRGLKGTPGLPGEEGRPGPAGTYGFPGDPGRSGPPGPAGTTGEPGRSGERGTEGDPG
PPGPIGLKGMPGAYGDDGAIGARGLPGDPGEPGATGRPGLQGLKGVKGSHGTSGFEGVKG
NTGLKGFEGQKGGPGTPGEVGLKGFSGAKGARGEQGLQGKPGVMSPKMLIHVKGAKGDHG
HQGIPGFTGPRGTKGYQGVPGYDGAHGLPGDPSNEKGVHGDPGAQGLPGVKGMPGTPGNR
GIQGFDGMHGDKGGKGSPGAYGHSGVKGKKGGKGEKGIRVDLPGSPGLRGEDGFTGEPGL
KGLLGPIGDIGITGFDGIEGVKGQAGDLGIGGYPGLDGQKGTPGNQGQKGFPGIPGEDGL
PGFPGFSGSKGFPGLQGLYGLDGLKGQKGLSGTPGLDSIGPAGETGVKGRKGESGVPNSQ
PGSPGSSGLKGFQGNLGDFGQPGLPGLRGLQGPGGIPDIPGKRGDPGFPGPRGSQGYPGR
SGPPGLDAFPGEKGVPGENGFPGPTGKRGSQGDSGPAGYRGPDGISGKKGPKGDQGHMGI
PGQTGLPGERGPVGPKGDTGFPGYPGAPGSPGRPPPSIKIPGERGFPGLRGIQGPKGISG
VSGPRGPPGDPGFMGPVGLKGMPGISGTPGVPGYRGEVGNVGHPGLQGMEGQRGRPGGPG
LPGMAGRSISVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSC
LPRFSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEKEIQPYISRCSVCEAPS
VAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIE
CNGAKGTCHYFANKHSFWLTSIDQSFHTQPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcagcaggacagagagcacacaaatctgagggtgctgctgctctgcctcttc
ctcgccgccctcgcctcgacagtgcaggctggtgggaagaagcacagtggcccatgtggg
ggaagagactgcagcggtggttgtaaatgctttccagagaagggtgccaggggtctttca
gggcctcttggtcctcagggcccacaggggcctcccgggcgaccaggggatcctggtatt
caaggacacaaggggcagaaaggtgaccaaggatctggtggcttcatagggccaaaaggc
agcacgggaatgactggtgtacctgggttctctgggaacgacggcatccctggccaccca
ggacaagctgggtccagagggaaacctggtgcagacggctgtaacgggaccaaaggagaa
cctggattcccaggattacctggttttatcgggggccctggaaatcccggtctaaaaggc
aggaagggagagaaaggggattctctggacgtcagaatttacatggagcgcttcagggga
gatccagggagaccgggagaggacggatttccggggcctccaggaccacaaggacaagaa
ggtagcagaggccctctaggaccaaagggtcctccaggtcctccagggccgcgtggacca
aagggcaccatgaccaaagtgttgaagggagtcaaaggagaaacaggggacatcggacca
cagggcccaccaggaaactacacaactcagcaacgtcaacctatcactggaccctctgga
ttcccaggtgacaaaggagaaagaggagatctggcagacaacttagatggcaaaggagaa
accggtataatgggaatgcctggctctcggggcgaaagtggtgcagatggacctccgggt
caaaagggtgagcctggttatccagggctgaaaggcagaaccgggccaaagggaggcata
ggtgatccaggggagctaatttcatcaggatttccctggtctgcgggtggtcttcctggg
ccccgtggtgagacgggtccagatggagagaggggtcagatcggagaccaaggcagaccc
ggaccacctggacgtcccatctctgacacacagcaacaaatttgggatttcttcggccct
tttggtgtaaagggggggaaaggagacaagggtctaccgggagaccaaggaagacctgct
gtctttccgggacccaaaggatctgatggaagtccggggagcagaggccctccaggaccc
agaggatcatggaaagagttctttaaaggagatgcagggccaaggggaagacctggcaat
gcaggggctaaaggatttaaaggggatcatggagaatgtcagtgcagtggtgaaaatttc
cgccgcggtttacctggtcctgccggtgagcacggagatcctgggatgactggagagttc
ggatacgaaggagacatgggagaccagggtagcagaggcgccaatgggattcctggatct
gccggcctcaagggttttccagggcccaaaggacgaaaaggagaaacaagtgttgcgaga
gaaaaaggatacgctggagatcctggagatcctggagatcctggagaccccgggattgat
ggagtggtaggatcacacggttctccaggcccaaatggtcttcatggtcgccctggtaac
cgcggtcctccaggcgaaggaccctggggagagcgtggagacaaagggttccccggatgg
cccggtagacctggttctgctgggttagtggggacaccaggtgtaaaccttgtaggtatc
aaaggacaacgtggtccacccggtgatgacggcctcgcaggctatgacggagttcaggga
acacctggaagtcccggcgactgtattccacatggagctggaggacaggtggatgtgaca
ggtagtgattgtgaccctgtcccgggtcctcctggtctgcctggaccttctggactcagt
ggaataccaggttctccaggagttcctggcccaagaggtttctcaggtctgcaaggagtc
aatggagagaaaggagaacaaggagagcgcggcagaggcggcacccctggaccacgaggt
tttcctggtccacgtggagacttggggactcctggcagtaaaggctctttagggaatcct
ggtgttccgggtatgcctggccgatatggatctcaaggggaaaaaggtgctcatggagaa
gtaatgggagcatcgcctggccctccaggtgacccaggactacctggcctgcgagggcaa
aagggccaacttggagatcaagggcagccagggttttcaggagttgacgggatgcctggc
atgatcggcttcaggggactgaaaggcaccccaggcctgccaggggaggagggaagaccc
gggccagctgggacgtacggcttccctggggatcctggcagatcaggcccacctggtccg
gcagggacaactggagagccaggaagatctggagagagaggaacagaaggggacccaggt
cctccaggtccaataggattaaaaggaatgccaggtgcttatggagatgacggtgcgatt
ggagcgcgtggcctgccaggtgaccctggagaaccaggtgcaaccggacgaccaggcctt
caaggactcaaaggagtaaaaggtagtcatggaacgtctggttttgagggagtcaaaggg
aatactggtctgaagggctttgagggacaaaaggggggacctggaacgcctggagaagtt
ggcctgaaaggattctcaggagcaaagggagcgagaggcgaacaaggtctgcaaggtaaa
cctggggtgatgtcaccaaaaatgcttatccatgtcaagggagccaaaggagaccacgga
caccagggcattccgggtttcaccggaccaagaggtaccaaaggttaccaaggtgtgcca
ggctatgatggagctcacggtcttccaggggaccccagcaatgaaaaaggagttcatgga
gatccaggtgcacagggcctgccaggcgtcaagggaatgccagggacacctggaaacaga
ggcattcaaggcttcgacggaatgcatggcgacaaagggggcaaaggaagccctggtgcc
tacggtcattcaggagtgaaaggaaagaaaggaggaaaaggtgagaagggcattcgagtg
gaccttccaggatctccaggattgagaggcgaggacgggtttacaggagaaccaggtctg
aaaggtctacttggaccaatcggggacattggtataaccggatttgacggtattgaaggg
gtaaagggacaagccggggatctggggattggaggatacccagggttggatgggcagaaa
ggaactccggggaaccaaggtcaaaagggttttcctggaattcccggggaagatggacta
ccaggctttcctggcttctctggaagcaaaggtttccccggcttacagggtctttatgga
ttagatggactgaaaggacagaaaggtctctcaggaacaccaggtctggacagtattgga
cctgctggagaaactggcgttaaaggaagaaaaggagaaagtggtgttcccaacagccag
ccaggttctccaggttcatcaggactgaaaggcttccagggaaatctgggtgactttggc
caacctggactgccaggactacgtggccttcagggaccaggtgggatcccagacataccg
ggaaagaggggggatcctggcttcccaggacctcgaggatcccaaggttatcctggacga
agtggaccccctggattggacgctttcccaggagagaaaggcgtaccaggcgaaaatggg
ttccccggccctactggtaagagaggatctcaaggagattcaggtccagcaggctacagg
ggccctgatggaatctctgggaagaaaggaccaaaaggagaccaaggtcacatgggaatt
cctggacagactggcttaccgggagagagaggaccagtgggtccgaaaggagacactgga
tttccaggttatcctggagcgcctggcagcccgggccgtcctccgccttccattaaaatc
ccaggagaaagaggctttccaggtctgcggggtatccaaggcccgaaagggatttcaggg
gtgtcaggacctcgaggcccacctggagatccagggttcatgggacctgttggacttaaa
ggcatgcctgggattagtggtactccaggagtgccaggttaccgcggcgaggtgggcaat
gtggggcaccccggtctccaaggcatggaaggtcaaagaggcaggcccggcgggccagga
ttacctggcatggcgggccgcagtatcagcgtgggctacctgctggtgaaacacagtcag
tcagaacagacgcccatgtgtccggtgggaatgtctaaactgtgggacggttacagtctg
ctgtacctggagggccaagagaaggcccacaaccaggacctcggtttggctggttcctgt
ctcccacggttcagcaccatgccctttctgtactgcaaccctggggacatttgctactac
gccagcagaaacgacaagtcctactggctgtcaaccactgctcccctccccatgatgcct
gtcgaagaaaaggaaatccagccgtacatcagccgttgctcggtttgcgaggctccatca
gttgctattgcggttcacagtcaggacatcactatcccacagtgtcccgtgggctggagg
agcctgtggattggctactccttcctcatgcacacggcagcaggaaacgaaggcggcggt
cagtccctgtcatcgcccggctcctgcctggaggacttccgcacaacgccgttcattgag
tgtaatggagccaagggcacatgccactactttgctaacaaacacagcttctggctgaca
tccatagaccagtcattccatactcagccatcatcggagacactaaaagcaggccagctc
ctttcacgcatcagtcgctgtcaggtctgcatgaagaacttgtga
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integrated database retrieval system
