Poeciliopsis prolifica (blackstripe livebearer): 129361771
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Entry
129361771 CDS
T09758
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04382
Cornified envelope formation
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129361771
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129361771
09142 Cell motility
04820 Cytoskeleton in muscle cells
129361771
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129361771
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129361771
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129361771
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129361771
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129361771
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129361771
NCBI-ProteinID:
XP_054888816
LinkDB
All DBs
Position
Unknown
AA seq
1654 aa
AA seq
DB search
MRTQVIIVFLMFFAMISTFTEGKSCVCNGKSRCHCKGVKGNRGEKGFPGDPGPPGPEGHP
GSLGQPGLTGPKGTTGSDGPMGSKGDPGPDGKEGFAGSHGLPGVPGLQGPMGPPGYPGCN
GTDGDPGRPGVEGNPGIDGNPGPPGQPGPKGDSQTTTHLIRGPPGPQGKDGRPGSPGLSG
EIGLPGDIGLRGPPGSPGNIGAPGSKGQEGAPGTRGPKGFRGPPGPPGPPGRTKDFFTGT
LSITDLKGNKGDAGDKGCKGEPGDPGSLYHTKGQKGERGNPGPEGKPGKDGEPGNRGFKG
RPGRRGEPGHPGPLGRMGEKGNMGPTGPPGNILRLESLKGHIGDPGPPGLPGFPGIQGVT
GFPGPPGSPGYALGIYVPGERGFPGPKGYKGDPGDPGSVYMGPPGFDGDPGDQGPRGNQG
KPGRFVNGTDCVIKGLPGIKGIKGLPGPTGNNGYIGDTGERGEICYECQTSGLSGPPGLR
GPPGLPGTNQGRGEKGDPGFPGPSGLPGPPGSIGLPGLSGQPGQKGEPSSNVSPGLKGEK
GEPGLPGRPGPNGSPGSLGLPGSKGTTGPPGELCHRHGVEGDPGFPGPPGHQGKEGPIGY
PGPAGYGPPGPPGTKGDTGVPGLPGDPGIPGQKGESGHFHTQGPPGPQGSQGPPGFEGSP
GVHGVPGVPGNPGKAGQKGERGGLILSGNPGPPGQKGDKGLPGSPGIPGWGLPGLSGPPG
PPGAPGEKGDSGHGHPGRPGPPGPPGENGAPGPAGDPGIPGLPGSPGIIGKSGLPGEKGR
KGSVGPPGLPGTKDLCIGLPGPVGFPGANGHTGPIGANGLPGEKGNAGLPGFGSPGLPGG
PGPSGLSVPGPHGPPGQKGSRGRDGWPGHQGQIGDRGPDGISGHGPEGIPGNTGHPGPRG
DPGPDGSRGQQGPQGMVGDPGDRGPPGLSCPTRLYTGPPGDPGEPGNPGLLGPTGDPGRS
GPKGQRGRAGPPGDLGPRGPPGEPGVDGQAASEARRGPDGAPGDPGHRGHPGLKGVKGDP
GITGRPGPDGVPGPTGSKGAVGEPSYVYGPPGPPGQKGEPGSRSDVMLKGQKGEPGIEGQ
VGVPGSPGAKGNTGPDGNNGPPGVPGPVGSDGPPGIKGPIGPVGRPGIPGPTGHTGEYGI
KGSQGLDGFPGPPGQKGDTVIIGGAQGRTGDPGPPGPPGDIGPPGLFSRGRPGPEGDRGL
PGPPGLHGESGRPGREGTCIPGPKGDRGFPGNPGSQGYPGPPGPQGLISSGLKGDRGEPG
FPGSPGFDGPPGNPGPPGPYGPPGVFGFPGPRGDPGPSGRHGPPGDRGDPGYRPGPCGSR
GHKGFPGRPGRKGEPAYFDRTYEPGPPGLPGPKGNQGLPGAIGPPGSLGPPGLPGMKGPR
GVSPPGPLGFIGHKGDKGKTGLPGQAGGPGIPGRKGLRGLPGRAATHYTDGFLIARHSQS
IKVPDCPNGTSLIYSGYSLLFINGNERAHGQDLGTVGSCLPRFSTMPFLFCDTESTCRYA
SRNDYSYWLSTDKLMPANMVAITADKVAPYISRCSVCETTSRIIAFHSQNTLIPECPRGW
ETLWTGYSFIMQTGAGAEGSSQPLMSPGSCMENFRRVPFIECHGRGTCNYYPDSYSYWLA
SLDRNNMFSKPVPQTVKGFSLERVISRCRVCRKF
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgagaacacaagtgatcatagttttcctgatgttttttgcaatgatctcaacgttcact
gaaggaaaaagttgtgtatgcaatggaaaatcaagatgccactgtaaaggagtaaaaggc
aacaggggagagaaaggttttccaggagatccaggtcctccaggaccagaagggcaccca
ggatccttaggtcaacctggactaacaggaccaaagggcactactgggtctgatggacca
atgggatcaaaaggcgacccgggaccagatggcaaggagggatttgctggatctcatggc
ttaccaggtgttccaggtttacaggggcctatggggcccccaggttatccaggctgcaat
ggaacagatggagaccctggacgtccaggtgttgaaggaaatcctggtattgatggaaat
ccaggacctccaggtcagcctggtcctaagggtgactcacagacaacaactcatttaata
cgagggcctccaggaccacagggaaaagatggaagaccgggttctccaggcttatcaggt
gagattggactacctggggacattggactaaggggtcctcctgggtctcctggtaatatc
ggagctcctggctccaagggccaggaaggagctccaggaactcgaggaccaaagggtttc
cgaggccccccaggcccacctgggcctccaggcaggactaaagacttttttaccggcacc
ctgtcaataacggatttaaaaggaaacaaaggtgatgcaggagacaaaggatgcaaagga
gaacctggagatcctgggagcctctaccacacaaaagggcaaaagggagagagaggaaac
ccaggtccagaaggaaagccaggaaaggacggtgaacctggaaatcgtggattcaaggga
agaccgggacgcagaggagagccaggacatccaggcccattaggaagaatgggtgaaaag
ggaaacatgggtccaactggtccacctggaaatatacttaggctcgaatcactaaaggga
cacattggagatcctggccctccaggtctccctggtttcccagggatccaaggtgttaca
ggatttccaggacctcctggttctccaggttatgcacttgggatttatgtaccaggtgaa
cgtggtttcccaggcccaaaagggtacaaaggagaccctggggatcctgggagtgtttac
atggggcctccagggttcgatggtgatcctggtgatcaagggcctcggggaaaccaaggc
aaacctggacgctttgtaaatggaactgactgtgtcattaagggtctacctgggatcaag
ggaattaaaggtttaccaggacctacagggaataatgggtatattggagatacaggagag
agaggggagatctgttatgagtgtcaaacatcgggactttcaggaccaccaggtcttcga
ggtccacctggcctccctggcactaatcaaggacggggtgaaaagggggatcccggcttt
ccaggtccttcaggtttacctgggcctccagggtctataggtctaccaggattatcaggc
cagccggggcaaaagggagagccatctagtaatgtctctccagggttgaagggggaaaaa
ggagaaccaggactgcctggaagacccggtccaaatggttctcctggatctctgggttta
ccaggaagtaaaggcactacagggcctcctggagaattgtgtcaccgccatggagtcgaa
ggagatcctgggtttcctggtccaccaggacatcaagggaaagaaggacccattggctac
cctggaccagcaggttatggacctcctggaccaccagggaccaaaggagacaccggtgta
cctggcctgccaggagatcctggaattccaggccaaaaaggggaatctggtcattttcat
acccaaggcccaccaggaccacaaggatctcaagggccacctggctttgaaggaagtcca
ggtgttcatggagtacccggtgtccctggaaatccaggcaaggcaggacaaaaaggagaa
agagggggcttgatacttagtggaaacccaggacccccagggcagaaaggtgataagggg
ctgcctggctctccaggtattccaggttggggtttacctgggctgtccggtcctccaggc
cctcctggtgccccaggagaaaagggtgacagtggccatggacaccctggtcgtccaggt
cctccaggaccacctggtgaaaatggagctccagggcctgccggcgatcctggaatccct
ggtcttccgggaagtcctggaataattggaaaatctgggcttccaggagaaaaaggaaga
aaaggttctgttggtcctccaggacttcctggtactaaagatttatgtattggtttgcct
ggaccagtaggatttccaggagcgaatggacacacaggacctataggggctaatggcttg
cctggagagaaaggtaatgcgggtttacctggatttggttctcctggccttccaggtggt
cctggaccctctggattgtcagttccaggtccacatgggcctccggggcagaagggatct
cggggtcgagatggctggcctggtcaccaaggacaaataggagaccgtgggcctgatggt
atatctggacatggtccagaaggaataccagggaatacaggacaccctggaccaagaggg
gacccaggcccagacggatcaagaggccaacaaggaccccaaggcatggtgggagatcca
ggtgatagaggccctccaggactttcttgtccaacacgcctctacactggacctccagga
gatcccggagaaccaggaaatcctggtttacttggtccaactggtgatcctggaagatct
ggaccaaagggacagagaggaagagctggaccaccaggggacttgggacccagaggtcct
cctggtgaacctggtgttgatggtcaagcggcatctgaagctaggcgaggaccagacgga
gccccgggagatcctggtcataggggtcatcctgggctcaaaggagtgaagggagaccct
ggaattactggaaggccaggaccagatggtgttccaggtccaacaggcagcaaaggagct
gttggagaaccaagctatgtgtacggaccacctggaccacctggacaaaagggtgaacca
gggtccaggagtgatgtcatgctcaagggacagaaaggagaacctgggattgaaggacaa
gttggtgttccaggaagccctggagcaaaggggaacacaggacctgatggaaacaatggt
cctccaggagttccgggtccagttggttctgatggtcctcctggaataaaaggacccata
ggacctgttggacgaccaggcattccaggcccaactggccatactggggaatatggtata
aaaggaagccagggacttgatggttttcctgggccaccgggtcaaaaaggggacacggtt
ataattggaggagcacaaggaagaactggtgatccaggcccaccaggtcctcctggcgat
atcggtccacctggtttgttcagcagagggaggccgggaccagaaggggacaggggactt
ccaggtccacctggacttcatggtgaatcaggaagaccaggaagagaagggacttgtatt
ccaggacctaaaggagatcgtggattccctggtaacccaggaagccaaggctaccctggt
ccaccaggccctcaaggcctcatatcatcagggttaaaaggagacagaggagagccaggg
ttccctggaagcccaggttttgatgggcccccaggaaatccaggccctccaggaccatat
ggtccacctggtgtatttggattcccaggaccaagaggagaccctggtccctcagggaga
cacggcccccctggtgacagaggagatcctggatacagaccaggtccatgtggttcacgt
gggcacaaaggttttcctggacgcccgggtcgcaaaggtgaacctgcctattttgacagg
acatacgaaccaggacctcctggattacctggtcctaaaggcaatcaaggacttccagga
gcgattgggccaccaggatcactaggaccgccaggactgcctggcatgaaaggaccacgt
ggagtgagccctcctggtcctcttggattcattggccacaaaggagacaagggaaaaaca
ggattgccaggtcaagcaggcggaccaggaattcctggtcgaaaaggactaagaggtttg
cctgggagagcagctacacattacacagatggttttctgattgccaggcacagtcagagc
attaaggtccctgactgccctaatggcaccagcctcatctactctggctattccctcctc
ttcatcaatggaaatgagagagctcacggccaggaccttggcacagtgggaagctgcctc
ccccgtttctccaccatgcccttcctgttctgcgatacagaaagtacctgccgctatgct
tctcgaaacgattattcctactggctgtccactgataagctcatgcctgccaacatggtt
gccatcacagctgataaagttgccccctacatcagcaggtgctcagtttgtgaaacaacc
tccagaataatagcttttcatagccagaacactttgatacctgaatgtcccagaggttgg
gagaccctgtggaccggttactcatttataatgcaaactggagcaggagcagaaggatcc
tcccaacccctgatgtctcccgggtcatgcatggaaaactttcgccgagtgccttttatt
gagtgtcacggcagaggcacctgtaattactatcctgattcctacagctactggctagcc
tcccttgaccgaaacaacatgtttagtaaaccagttccccagactgtgaagggattttct
ctggagagagtcatcagtcgctgtcgggtctgcagaaaattctaa
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integrated database retrieval system
