Poeciliopsis prolifica (blackstripe livebearer): 129362058
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Entry
129362058 CDS
T09758
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03008
Ribosome biogenesis in eukaryotes
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129362058 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
129362058 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129362058 (xrn1)
03009 Ribosome biogenesis [BR:
pprl03009
]
129362058 (xrn1)
03016 Transfer RNA biogenesis [BR:
pprl03016
]
129362058 (xrn1)
03036 Chromosome and associated proteins [BR:
pprl03036
]
129362058 (xrn1)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129362058 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
129362058 (xrn1)
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
Pre-60S particles
RNases
129362058 (xrn1)
Transfer RNA biogenesis [BR:
pprl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129362058 (xrn1)
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129362058 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
DUF6062
Motif
Other DBs
NCBI-GeneID:
129362058
NCBI-ProteinID:
XP_054889355
LinkDB
All DBs
Position
Unknown
AA seq
1713 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHKIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKVSTDKLWQNVKVFLSGHETPGEGEHK
IMEFIRSENAKPNHDPNTRHCLYGLDADLIMLGLTSHEHNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKRHMGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYVSVLPGLGGYLNENGYLNLRNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNESAGLAAEQEAVIRAGRKTEDTSIHLTTLTSPEKVAEQEKKDMADDVE
EEEEEDEMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSW
SWYYPFHYAPFLSDIRNISELKLTFDLGKPFMPFQQLLAVLPAASKELLPESYRDLMTSP
NSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDETCLLAAMEPFSSKLTKEEKARNRHSE
CGLYSYDPDIDFTYASSLPQLFPNIVHCHVREVQIPMDAWHVPSDHVSKRVDRSTLYFCG
FPTLHHIKHKFYKKKSGVVVFQQSSRGENMILDILPSQDGETICDHVAADLLGKPVFVNW
PHLEEARVIAVSDGETKFAIEEPPGVQQVYDRPSSPPPTKVTYLSDKEQKDWVKDVQGIT
EHFFKRKGIAVNETTVLLYGQMLTGRKYVPKASGVVELEKQWAKQVLPFAYQTVVKDIKA
FYSSLTCFKSLDELFPPSTTVFMVGSPYYGAMGEVQDSQDVIKDGRIRVVFSVPHEPQLE
HLIQNQHKYSVKYCPGYVLASRLGVSGYLVSRFSGSIFIGRGSKKNPCGEQRANVGLNLK
FNKKNEEVPGYTKRTEKEWLYSAAVEELLAEYLDRFSEVFDAVSRNSHDDVFYEDDIWPG
EDQNGAEKVAEITSWLKSHPVSSTSRTSCDLQVLDSAIVEKIEEAVEKTKVKKSTKKVRV
TVKPHLLFRPLEQQQGVVPDPEAEYRLFDRVVNIRESFTVPLGHRGTIIGIKGADREAEV
LYEVLFDEEFAGGLNIRCTSPRGYRLPPCALINLSHGTRLDHGSHKLTAIVKPQPSTSAN
FSMQRLAGLNHSPRSPFVPTQHNKNAVASQGNKTPSKGPNQKQQAKSKEEYNNVWQLLQK
NGPPSQPPAHWHNDGAALQQGKNQRSSKAAPVGGIRLLKKNEDLNSFFPPKNTATKGTTE
FEDLIANLKISQGNQQTPPPPAPLEEPSNQSDGPLSPQSFAMKGTLVLKEMLKIDGAGKG
SPTSQESIDSAPPAGQQQNRKRSSKKLAAKINNPPGESVTLASPAPAASAHAALGGKVSE
LACFCVGVGMAPPDFSFIRNRQGPVVCQVKLSNGLMIHGPQCQSENEAKEKAAFFALQRL
NSLGSGFPLPPHLYPGIAQMQPLPMGAMSPVFSQQGGLLLPSQGFGPSPLWGMTLPPHHH
PTQPFYAAAGTFPGAVHTPSPNPLHIGSHNQFVPLQVTKKRASANKKNQETREFYSAAQT
VAKNQSLKAQSSAQSQHQNQSQGSKPHQPHTQQANSDPSSSSPGPADGVSTKSAVQHAPP
RQSAAPAGHAPSSASKRKHRKLAVNFEATKVSE
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgccgaaattttaccgctggatttctgaacgctatccttgtctcagtgaagtt
gtcaaagaacacaagattccagagttcgacaacctttatctggacatgaatggcatcatc
caccagtgctctcacccgaatgatgaagatgtccattttcgcatatctgaggagaagatc
tttgcagacattttccattacctggaggtactgtttcggatcatcaagccacgcaaggtc
ttcttcatggctgtggacggtgtggcaccaagggcaaagatgaatcagcaaagaggacgc
agattcaggtccgccaaagaagcagaggagaagattaaaaaagcgctggacaaaggagag
gttcttccaacagaagctcgcttcgactccaactgtatcactcctggaactgatttcatg
gcgagactacaggaacagctcaagtactttgtccacaacaaggtgtctacagacaaactg
tggcaaaacgtcaaagtcttcttgtcgggtcatgagacaccgggtgaaggagaacataag
atcatggagtttatccgttctgagaacgccaaaccgaatcatgatcccaacacccgacac
tgcctgtatggcctggatgctgacctgatcatgttgggcttaaccagtcatgagcataat
ttctccctgctcagagaggaagtccgctttggaggaaaaaaatcccagaaaagaataacg
gctccagaggagacaacttttcacctgctgcatctgtctctgatgagggagtacatcgac
tatgagttctcagagctaaagcgtcatatgggttctgattatgatctggagcgaataata
gacgactggatattaatggggttcctcgtaggaaatgatttcatccctcacctccctcat
cttcacattaatcatgatgctttgccgttgctgtacaaaacttacgtcagtgtactaccc
ggcctggggggctacctgaatgagaatggctatttaaacctcagaaattttgagaaatac
ctggagaaactttctgagtttgaccgggaacactttagcgaagtgtttgttgacttgaag
tggttcgagagtaaagtcggcaacaaatatctgaacgagtcggccggtctggcagccgag
caggaagcggtgatccgagctgggagaaagacagaggacacttctattcatctcaccacc
ttgacctcaccggaaaaagtggctgaacaagaaaaaaaagacatggcagatgatgttgag
gaggaggaagaggaagatgagatgtttgaaacagagttcagacaatacaaacggacatac
tatatgaccaagatgggcgtggatgtggtctctgatgaatttctcgccaagcaagccaaa
tgctatgtggaaggcatccagtggattcttcactactactaccacggtgttcagtcatgg
agctggtactatcctttccactatgccccgtttttgtctgacatccgaaacatatcagag
ttgaagctgacctttgacctcgggaaacccttcatgcctttccagcagctgcttgctgtc
ctgcctgctgccagcaaggagctgctcccagagagctacagggacttgatgaccagtcca
aactctcccattatcgaatactatcctcttgacttcaaaactgacctcaatggaaagcag
caggagtgggaagctgtggtgctcattccgttcatagacgagacgtgccttttagcagct
atggagcctttcagttccaaactgacgaaggaagagaaggccaggaaccggcactcggag
tgcggcttgtactcctacgacccagacattgacttcacatacgcctcctccctgccgcag
ctcttcccaaacatcgtccattgtcatgtcagggaagtccagatccccatggatgcctgg
catgtgccatcagaccacgtcagcaagcgcgttgaccgctcgactttatacttctgtggt
ttccccactctgcaccacatcaagcacaagttttataagaagaagagcggagtggtcgtg
ttccagcagagcagcagaggagaaaacatgattctggacatccttcctagtcaggatggg
gaaacgatatgtgatcatgttgctgcagaccttttggggaagcccgtgtttgtcaactgg
ccccatctagaggaagctcgtgttattgcggtgtcggatggcgaaaccaaatttgctata
gaggagcctcctggagtccaacaagtgtatgacaggccgtccagtcctccacccactaaa
gtaacttatctgtctgacaaagagcagaaggactgggtgaaggatgtccagggaatcact
gaacacttcttcaagaggaaaggcatcgcagtgaacgagacaaccgtgcttttgtacggt
cagatgctgacaggaaggaagtatgtccctaaagccagtggagtggtggagctggaaaaa
cagtgggccaagcaggttctcccattcgcctaccagactgtggttaaggacatcaaggcc
ttttactcatctctgacctgctttaagagtttggatgaactttttcctccgtcaacgaca
gtcttcatggtgggaagcccttactatggtgccatgggagaggttcaagactcccaagat
gtcatcaaagacggtcggatacgagtggttttcagtgtgcctcatgagccgcagctggaa
cacttgatccagaatcagcataaatactcggtcaagtactgcccaggctacgtcctggct
tcccgcctcggcgtcagcggctacctcgtctcccgcttctcaggaagcatcttcatcggc
cgaggctccaagaagaatccatgcggggagcagagagctaacgtcgggcttaacttgaag
ttcaacaagaagaacgaggaggttcctgggtacaccaagagaacggagaaagagtggctc
tactctgctgctgtggaggagctgcttgctgaatacctggacagattttctgaagttttt
gatgcagtgtccagaaacagtcacgacgacgtgttctacgaagacgacatctggccggga
gaggatcagaacggggcggagaaggtggctgaaatcacctcctggttgaaaagtcatcca
gtcagctccaccagcaggacgtcatgcgacctccaggttctggactctgccattgtggag
aagatcgaggaagccgtggaaaagaccaaggtgaagaagagcaccaagaaagtccgcgtg
acggtcaagcctcatctcctgtttcggcccctggagcagcagcagggcgtggtcccagac
cccgaggccgagtaccggctgtttgacagagtcgtcaacatcagggagagcttcaccgtc
ccgctgggacacagagggacgatcattggcattaaaggagcggaccgcgaggctgaggtt
ctctatgaggtcctgtttgatgaggaatttgctggaggtcttaacatcaggtgtacctcc
ccccgcggttaccgcctccctccctgcgctctcatcaacttgtcccacggcacccggctg
gaccacggctcccacaaactcaccgccatcgtcaaaccgcagccatccaccagcgccaac
ttcagcatgcagcgcctggcgggcctgaatcactcgccccgctcaccctttgtgcccaca
cagcacaacaagaacgccgtggcgtctcagggtaacaaaaccccatctaaaggtcccaat
cagaaacaacaagctaagtctaaagaggagtacaacaacgtgtggcaattgctccagaag
aacggccctcccagccaacctccagctcactggcacaatgatggagcagctttacaacaa
ggaaagaatcagcgttccagtaaagctgctcccgtcggtggcatcagactattaaagaaa
aatgaagacctcaactcctttttccctccaaagaacacagctactaagggcaccactgag
tttgaggatcttattgcaaacctaaagatttcccagggtaaccagcaaacgccaccgcct
cctgcccctctggaggaacccagcaaccagtcagatggtccgttgtccccccagtccttc
gccatgaaaggaaccctggttctgaaggagatgctgaagattgatggcgccggaaaagga
agcccaacatcccaggagtcgatagacagtgcgccccctgctggccagcagcagaacaga
aagcgatcgagcaagaagctggctgcaaaaataaacaaccctcctggggaatcggtcacg
ctggcctctccagcgccggctgcctctgctcacgctgccctgggtgggaaggtgtcggag
ctggcttgtttctgcgtgggcgtgggcatggcccctcctgacttcagctttattcgcaac
cgacagggtccggtagtgtgtcaggtgaagctgtccaacgggttaatgattcacggacct
cagtgtcagtcagaaaacgaagccaaggagaaagctgccttctttgccctccaaagactg
aactctctgggctccgggttccccctccctcctcatctatatccggggatagctcagatg
cagccgctgccaatgggagccatgtcaccagtcttcagccagcaaggcggtttgctgctg
ccctctcagggcttcggcccctcccccctgtggggaatgaccctgcctccccaccaccac
cccacccagccgttctacgcagcagccggaaccttccccggcgccgtccacacgccgtct
cccaaccctctacacattggctcacacaaccagttcgtccccttacaggtgactaaaaaa
cgagcatcggccaacaagaagaaccaggaaaccagagagttttacagcgccgcccaaact
gttgccaagaaccaatccctgaaagcccagagctctgctcagtcccaacatcagaaccaa
tcacagggcagcaaaccacaccagccacacacacagcaggccaacagcgacccctcctcg
tccagccccggcccggccgacggcgtctccacgaagtccgcggtccagcacgcgcctccc
agacagagcgcggcccctgcaggccacgcccctagctccgcctccaagaggaagcacagg
aagttggctgttaactttgaggcaactaaagtgtcagagtga
DBGET
integrated database retrieval system
