KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129362405
Entry
129362405         CDS       T09758                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013  Nucleocytoplasmic transport
pprl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129362405 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    129362405 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pprl03019]
    129362405 (thoc3)
   03041 Spliceosome [BR:pprl03041]
    129362405 (thoc3)
Messenger RNA biogenesis [BR:pprl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     129362405 (thoc3)
Spliceosome [BR:pprl03041]
 Complex C
  Other components
   EJC/TREX
    129362405 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129362405 (thoc3)
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_IFT122_1st eIF2A Beta-prop_Vps41 WD40_RFWD3 Beta-prop_TEP1_C RMC1_N Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th B-prop_COPA_B_2nd PD40 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 Beta-prop_Nup120_160 Beta-prop_SCAP WD_LRWD1 Beta-prop_NWD2_C Cytochrom_D1 DPPIV_N Beta-prop_ELP1_1st Beta-prop_WDR11_1st PROPPIN YNCE Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 129362405
NCBI-ProteinID: XP_054889871
LinkDB
Position
Unknown
AA seq 322 aa
MASQYYQEMQESFRNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFILEKDRL
VKENNYRGHSDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCVATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPDLKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSNDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcgcagtattaccaagaaatgcaggagagcttcagaaataacaacaaaagtcgg
gaattcccggctcatacagctaaagttcactcggtggcgtggagctgcgatggaaggagg
ctcgcctccggctcgtttgataaaacagccagcgttttcatcctggaaaaggaccgcttg
gtgaaggagaacaactacagaggacacagtgacagtgtggatcagttgtgctggcatcca
accaacccggatctgttcgtcactgcgtctggcgacaaaaccattcgcatatgggatgtg
cgcaccaccaaatgtgtcgccacagtcaacacaaagggtgagaacattaatatctgctgg
agtccagacggtcagaccatcgcagtcgggaacaaagacgacgtggtgaccttcatcgac
gccaagacgcaccgctccagggcggaggagcagttcaagttcgaagtgaacgagatctcc
tggaacaacgacaacgacatgttcttcctcaccaacgggaacggctgtatcaatatcctc
agttatccagatctgaagcccatccagtccatcaacgcccacccgtccaactgcatatgc
atcaagttcgaccccacggggaaatactttgccacaggaagtgctgatgctctcgttagt
ctgtgggacgtggaggagctggtgtgtgtccgctgcttctccagactggactggccagtg
aggacgctgagcttcagcaatgatgggaagatgttggcctccgcgtctgaggatcacttc
attgacatcgcagaggtggaaacaggtgagaagctgtgggaggttcagtgcgattcccca
acgttcacagtcgcctggcacccaaagagacccctgctggcctacgcctgcgacgacaag
gagggcaaatatgacaacaaccgagaggcaggaacagttaaactgtttggccttcccaac
gactcctga

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