Poeciliopsis prolifica (blackstripe livebearer): 129362455
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Entry
129362455 CDS
T09758
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03008
Ribosome biogenesis in eukaryotes
pprl03013
Nucleocytoplasmic transport
pprl03015
mRNA surveillance pathway
pprl05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129362455 (nxf1a)
03015 mRNA surveillance pathway
129362455 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
129362455 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129362455 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129362455 (nxf1a)
03009 Ribosome biogenesis [BR:
pprl03009
]
129362455 (nxf1a)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129362455 (nxf1a)
mRNA cycle factors
Stress granule specific factors
129362455 (nxf1a)
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
129362455 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_9
LRR_4
DUF3592
Motif
Other DBs
NCBI-GeneID:
129362455
NCBI-ProteinID:
XP_054889950
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MFRRNYPNLAVVTRVISDGHEDFMVKREVTQADFTVHREHDDRTAPFRNRKGRGAKGRSF
DRSRRDRQRGNHSGGFGGPGPRSRLLDDTDGDVTMSDSSQDSSSQNRYNPYGRPSRKADG
RTDRDRRPGKIGGGRGFPGGGGGGFRGDRGGGLRSRLSWYKVTIPHGRKYEKKWLITALQ
NICTVQYTPVQYHVDHHRAHFYVEDSAAATALRKCSHKITDSDGYKVEVHVNPSNPPSFL
QSDLKPEDLEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSQNIEVILNRKTNMEAVIKII
EENIPELACLNLSNNRIHKLDDLTDLTTKVPNLKALNLSQNELKTDRELDKLKGLKLVEL
WLSRNPLCDVLKDQAAYISAVRQRFPRLLKLDGHDLPPPIGFDVETPTAIPPCKGSCFGS
DEIKSLILRFLQQYYSIYDSGNRQPLLDAYHDGASLSITTPYTSQNPSRSSLGEYYKDSR
NLKRIKDSTMRFRLLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTNTLLSFTVSGVFK
EVVVDGKSRESTMAFSRVFITVPAGNSGLCIVNDQLFIRMATTEEIRRAFVAPAPTPSSS
PVPTLTAPQQEMLTAFSLKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKAEGKIPDVAFI
K
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtttcggagaaactaccctaacctagccgtggtgacccgcgttataagtgacggccat
gaagactttatggtgaagagagaggtcacacaagcagatttcacagtccacagagagcat
gatgacagaaccgcaccatttcgaaaccgtaaaggcagaggagccaagggtcggtcattt
gacagatctcggagggaccgccagagaggcaatcactcaggagggtttggaggccccggt
ccccggtctaggctgctggatgatacagatggagatgttactatgagcgacagctctcag
gacagcagctcgcagaacagatacaatccttatggaagaccatctcggaaagcagatggc
cggactgacagagataggcggccggggaaaataggaggaggaagaggatttccaggaggt
ggcggcggtggtttcagaggagaccgaggtggaggtttgagaagccggttaagctggtac
aaagtaacgataccgcatggaagaaaatacgaaaagaaatggttgattacagctctccag
aacatctgtacggttcagtacacacctgtacagtaccacgttgaccatcatagggcccat
ttctatgtggaggattcagctgcagccaccgctctgcgcaaatgttctcacaagatcaca
gattcggacggctataaggtggaagtacatgtcaacccaagtaatccaccatccttcctg
cagtccgacctgaagcctgaagaccttgagcacctgaagcaatgcatggcgaaacgcttt
gatggatcccagcaagcacttgacttgaacaacattcgaaccgacccagacttggtgtct
cagaacattgaagtcatcttgaacagaaaaacgaacatggaggcagtcattaagataatt
gaagaaaacattcctgagctggcgtgtttgaatctgagtaacaaccgtattcacaaactg
gatgatcttactgacttgacgaccaaagtgccgaatctgaaggcgctcaacctttctcaa
aatgagttaaaaacggatcgtgagctggataagttaaaaggcctgaagctggtggagctg
tggttgagcaggaaccctctgtgtgacgtcttaaaggatcaagctgcgtacatcagtgcc
gtgcggcagaggttcccccggctcctcaagctggatggtcacgacctcccacctcccatt
ggatttgatgttgagacgccgactgcaatcccaccctgcaagggaagctgctttggatca
gatgaaatcaagtctctcatccttcggttcttgcaacagtactacagtatatacgactct
gggaacaggcagcctctgctggatgcttaccatgatggagcttcattatccatcactaca
ccctacacctcccagaacccctccaggagcagtctgggggaatactacaaagacagcaga
aacctgaagaggatcaaagactccacgatgagatttcgacttctgaagcatactcgactg
aacgttgtggcgttcctcaacgagctcccaaaaacacaacacgacattgcctcatttacc
gtagatgtgaacacctacaccaacacactactatcattcacagtcagtggagtctttaaa
gaagttgttgttgatgggaagtccagagaatctacgatggccttttcccgtgtcttcatc
accgtcccagcaggaaattccggtttgtgcattgtgaacgatcagcttttcatccgaatg
gcgacaacagaggagatccgccgagcgtttgtggctccagccccgaccccgtcttccagt
cccgtcccaaccctcaccgcaccacaacaagagatgctcactgctttctcgctaaagtct
ggcatgaatctggaatggtcacaaaagtgtctgcaggacaatgagtgggattttaacaga
gcagcacagattttcacacagttgaaggcggaaggcaagatcccagatgtagccttcata
aagtga
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