Poeciliopsis prolifica (blackstripe livebearer): 129362508
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Entry
129362508 CDS
T09758
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129362508 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129362508 (cnot6a)
Enzymes [BR:
pprl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129362508 (cnot6a)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129362508 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129362508 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
129362508
NCBI-ProteinID:
XP_054890029
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLSYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRPATLFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILGCNADIISLQE
VETEQYFNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFFKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEMSSGKSLHGLDKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSFKLSTSGETSAIPLVLCADLNSLPDSG
VVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPYT
NYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLYAQLEL
LLPNVPSQVNGLHLPARR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtatacaattatgtctagc
gaggaggcagcaaatgggaagaagtcatactgggctgagctggaaattagtggccgagta
aggagtctcagcaccgccctgtggtctctcacccacctcactgccctgcacctcagtgac
aactctctgtcacgcatcccgccagacattgccaaactacacaacctggtgtacctggat
ctctcatccaacaagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaattgcttttaaataacaaccagttgcgagttctcccatttgaattgggaaaacttttt
cagttacagacactggggttaaaaggaaacccacttgcacaagaaattatgagcctctat
caggaacctgacggcacacggagactgctcagctacttgttagacaatctggcaggggct
attaagcgcataccaacagagcagccaccagctaggtcatggatctcgctccaggaacca
gaccgaacacgtccagcaacactgttctcagttatgtgttacaatgtgctgtgcgataag
tatgccacacgacagctgtacggctactgcccctcctgggctttgaactgggagtacagg
aagaaatctatcatgcaggaaatcctaggctgcaatgcagacatcataagtttgcaggaa
gtggaaacggagcagtacttcaatttcttcttgccagagttgaaagagcagggatacgac
gggttcttcagtccaaagtcacgagctagaacgatgtccgagtcggatcgtaaacatgtg
gatggatgtgcaatcttcttcaaaacagaaaaattcagcgctgtgcagaagcacacagtg
gagttcaaccagctggccatggctaactccgagggctcagaggcgatgctgaacagggtg
atgaccaaggacaacatcggagtagctgtattgcttgaagtccgcaaagagatgatggaa
atgtcttctggtaagtcactccacggcctggacaaacagctcctgctggtggcaaacgcc
cacatgcactgggatcccgagtactcggatgtcaagttggtccagaccatgatgttcctg
tcagaggtgaagaatatcgtggacaaggcaacacgcagcttcaagctgtccacctctggt
gagaccagtgccattccactggtgctgtgtgctgacctcaactccttacccgactctggt
gtagtcgagtacctgagcacaggcggagtggactgcacccacaaggatttcaaggagctt
cgctacagcgacagcctgaccaaattcaactgcaacggcaagaacagcacttctaatggc
aggatcacccacggcttcaagctcaagagcgcctatgagaacggcctaatgccttacacc
aattacaccttcgactttaagggtgtcatcgactatattttctactccaagccacatctg
aacgtgttgggcatcttgggccccctggaccctcactggctcgtagagaacaatgtcagc
ggctgcccacacccccacatcccctctgaccacttctccctctatgctcagctggagttg
ctcctgcccaacgtgccctcccaggtcaatgggctgcacttgcctgcacgcaggtag
DBGET
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