Poeciliopsis prolifica (blackstripe livebearer): 129363154
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Entry
129363154 CDS
T09758
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129363154 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
pprl03036
]
129363154 (tnrc6c1)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129363154 (tnrc6c1)
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129363154 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
Ago_hook
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
129363154
NCBI-ProteinID:
XP_054891020
LinkDB
All DBs
Position
Unknown
AA seq
1873 aa
AA seq
DB search
MEDKKKKKQEEKKKKEAAQKKTTEQITKVPDSAKLDPTPPLLPANPGAIPPVPQSSGNGK
RAPSGCQPQTAQQSQTLLQQQQQQQQQRYLPREVPPRFRQQEQKQLLKRGQPLPPGTLPL
LTTRYPDTSESAASTVAINPSPSCTSSSSASLPTVLPPHSGQGTQYDNPIWGHLPANRSA
TSAASSTSPSGWDQLIIDQKDSEAWPSITLSQSQDSPAGCPLDTDPGHLTTSSSSSSSSC
SAVSMATGANSQTGHFAANHLNSKANSGPSPVNHTGTSMLSSQVATNRSWGSGPGPSHCP
PQSSVGNEGKCDSPVGGSSRAWGSSSSSSTTNFNLNLNPNANPSAWPVLGHDGGGTGGGS
SGGANTISSPQPTPNLCNTPGPPPAQTSACSGANNNGKSSGIGSAWGTIMTSDESHLTPS
TNVSFSSEPQNLKTDGPNQTKKQEPPSPIQNLSGWGSSPVGLGSMGQPGGSQVNGEDGNS
LWGNGGNSKPTSSKEGPGWDSAWGNVGGGTVKSGGWSEQSSGDWGKQHSEEAQGGWDAPS
SPPQDSQANTWSRAVSTAGASEGSSDSMEGYPQQKDRPTREKTVPMMPAQDLDPRVLCNT
GWGQTPVRQHTTWDMDDSKRKNDAGTDSWGSGPTAPSNVQGPSNTNTGPAPRPDSGNKND
VPGSQGPSGWGGSMAASHASNSGWGDTPTNVKHPVGHSGWGNTPTGGPSNSIPKNGAQSW
GEEKSSGWDDSQGKSTSQSWGEQPKTSNSWGSSGGSNNTGDWGEPEESKKSSSGPDWKGE
SGNWKENKRDWGMSGHGGSGAGNSSSWGDSAPQRPCGPPQGWMGKPQDGPSSNSGGGTMG
SWGGPGSVKQGASWGGGKKEPSNEATGWEEPSPPSIRRKMEIDDGTSAWGDPGDYNKAVN
LWDRNNPGTVQAKVTTGVSNPPAPSNNHPHAHNHSYHGPPAPLQNHSQNAQNPGPASGAA
DPSVQHQSGTPHIRGPLIAQGWGELPSSHIKSESSWGEAAPSPVSVDNGTSAWGKPSGGA
GGWGDGNPDNYGRSNPAMTAAPGKPASKPMQDGWGGGGEELSLSGGQWDSEEGDMWNSTA
SQESNSSCNSWGNASKKGPQKVKIPGKQEDAWIMKQLIKQLTDMGFPRDPAEDALKSNNM
NLDQAMSALLEKKTELDKRGIGTGGHDYNNGLINKPMSCPRPSLLSKDPSTDPRLPFIDK
QMQSGMFGGGGAAQTRAMQQPQPPPQPPVPPLSSSQPSLRAQVPQFLSPQVQAQLLQFAA
KNIGLNPALLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPIRQQEQQVA
RTINNMQQQIQQHQRQLAQALLMKQQQQQQPSHSGLHPGGAKSSLDSYPGHPQTPVLPDL
QTKEPQSSPNTYSPYALSGLNPNCIDVGSLPMKDPPLPQSRLSQWTHPNSIESLSGNSSP
LEPNLGKHGANLGPPGKPPQIDDSYNPYNLISSSESPTSPLVPPESWGQGKNSSDKMANG
TNINWPPEFCPGVPWKGLQNIDPETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSGGSS
PISSQSEALPSSTDWPVSAYSSSFSLSSPEMDDAGKLSEMKSTWSPGPISHSQASLSHEL
WKVPQGPRSSTTAPSRPPPGLTNTKPSSTWGGSSLGLAQGWSSSYTTAGTTWSTDSSTRT
SSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKDEAAKAQKSLHMC
VLGNTTILAEFAGEEEVNRFFAQGQSLGGTTSWQATPGTNQTRMGGSGSGVAHPIGHSPH
WNNNNNSGGGGGGGSSGGLGAGGTKTGGELLWGGVQQYSSLWGPPSGEEGRVMGSPTPIN
TLLPGDLLSGESM
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagaaaaagaaaaaacaagaagagaagaaaaagaaagaagctgcacaaaaa
aagaccacagaacagataaccaaagtgccagactctgccaagctcgaccccacccctcct
cttctccccgccaaccccggtgccatcccacccgtaccccaaagcagtggaaatgggaag
cgcgccccctccggatgccagccgcagacagcacagcagtcgcagactttgctccagcag
cagcagcagcagcagcagcagcgctacctgcccagagaggtgccaccgcgcttccgccag
caggagcaaaagcagctgttgaagaggggccagcctcttcctcccgggaccctgcctctc
ctaaccacgagatatcccgacactagtgaatctgcagcatcaacagtagccataaacccc
tctccatcctgtacctcttcctcctcagccagcttgcccacagtactgcccccgcatagt
ggccaaggaacccagtatgataaccccatctggggacacctgccagccaacagaagtgcc
acaagtgctgcatcttccaccagtcccagtggctgggatcaactgataattgaccagaag
gactcagaggcttggccttctattactctcagtcagagccaggattctccagcaggatgc
cctttggacactgaccctggtcacctgaccaccagcagcagtagttcaagcagtagttgt
agtgcagtgagtatggccacaggagccaatagtcagacaggccacttcgctgccaaccac
cttaacagcaaagccaacagtgggcctagccctgtcaatcatactggaaccagcatgctc
tcaagccaggttgcaaccaatcgcagttggggatctgggccaggaccttctcattgcccc
cctcagtcctcagtgggtaatgaaggaaagtgcgatagcccagtaggaggaagcagcagg
gcctggggttcctcttcatcatcctccaccaccaactttaacttgaacctaaaccctaat
gccaacccatctgcatggcccgtgttggggcatgatggaggaggcacagggggaggcagc
tcaggtggagccaacaccatttcatctcctcaacctacacctaatctctgtaacactcct
ggccccccaccagcccaaaccagtgcctgttctggagccaacaataacggcaagtcttct
gggattggcagcgcatggggtaccataatgacttctgatgaatcacacctcactccatcc
acgaatgtgtctttcagttctgaacctcaaaaccttaaaactgatggaccaaatcagact
aaaaaacaagaacctcctagcccgatccaaaacttgtctggttggggcagctcacctgta
ggcttgggttctatgggacaaccagggggttcacaggtcaacggagaagatggcaactct
ttgtggggtaatggtggcaattcaaagccaacttcgtcaaaggaaggacctggctgggat
tccgcttggggaaatgtgggaggtggaactgtaaagtctggaggctggagtgaacagtcc
agtggggactgggggaaacagcatagcgaagaggcccagggaggctgggatgcgcccagc
tctcctccccaggactcacaagccaatacttggagcagagctgtgagcacagctggtgcc
agtgaagggagcagtgacagcatggaaggatatccccaacagaaagatcgcccaaccaga
gaaaaaactgttcctatgatgcctgcccaggatctggaccccagggtgctgtgcaacacc
ggctggggtcagactcctgttcgacagcacacaacctgggacatggacgattctaaacgc
aagaatgacgctggcactgattcatggggctctgggcctacagctccaagcaatgtccag
ggaccctcaaacactaacacgggccccgctccgagacctgactctggtaacaaaaatgat
gtgcctggttcacagggaccttctggttggggtggaagcatggctgcttcacatgcatcc
aattccggttggggagacacacccaccaatgtaaagcacccagtagggcatagtggatgg
ggtaacactccaacaggaggcccttccaacagcatacccaagaacggggctcaatcttgg
ggggaggaaaaatcatctggctgggatgattcacaaggcaagtcaacatcacagagctgg
ggagagcaacccaaaacatccaactcttggggcagcagtggaggaagcaataacactggg
gactggggagaaccagaagagagtaaaaagagctcctctggccctgactggaaaggagaa
tcaggaaactggaaagaaaacaaacgagattggggaatgtcaggacatggaggttctgga
gctggaaacagcagcagctggggtgactctgcaccacagcgcccatgtggtcctcctcaa
ggctggatgggcaagcctcaggatgggcccagcagtaacagcggaggagggactatgggc
tcttggggtggtcccggctctgtgaagcagggtgcatcgtggggtggtggtaagaaagaa
ccctcaaatgaagcaacagggtgggaagagccctctccgccttcaatccgtcgcaagatg
gagatagatgatgggacctctgcctggggtgaccccggtgactacaataaagcagtcaac
ctgtgggacaggaacaacccagggacggtccaggctaaagttactacaggagttagtaac
cctccagctcctagcaataaccacccccacgctcacaatcactcctatcatgggccgcct
gcacctttacagaaccatagccaaaacgctcaaaacccaggccctgccagtggggctgca
gatccttcagtgcaacaccagtctggaacacctcacattaggggtcctctgatagctcaa
ggttggggagagcttcccagctcccacataaaatcggagagctcttggggagaagcggca
ccctctccagtcagcgtggataatggcacatctgcttggggcaaaccgagcggaggcgcc
ggaggctggggagatggcaacccagacaactacggcaggagcaacccagcgatgacggca
gcgcccggcaaacctgcctccaaacctatgcaagatggatggggaggaggaggtgaagag
ctcagcctttcagggggtcagtgggactctgaggagggagacatgtggaacagcacagcc
tcccaggagagcaactcttcttgtaactcctggggcaacgcatccaaaaaaggcccacag
aaagtaaagatcccagggaaacaggaggatgcctggatcatgaaacagctcatcaaacag
ctcacagacatgggcttccctagggatccagcagaggatgctttgaagagcaacaacatg
aacttggatcaggccatgagtgccctgctggagaagaagacagagctcgacaagcgtggg
atcgggactggcggccacgactacaacaacgggctcatcaacaagcccatgagttgccct
cggccttcacttctctccaaagacccctcaacagaccctcgcctgcccttcattgataag
cagatgcagagtggaatgtttggtggtggtggagcagcacaaacccgggccatgcagcag
ccgcagccgcctcctcagccaccagtgccgcctctcagctcctctcagcctagtctacgt
gcgcaagtgcctcagtttctctcccctcaggttcaagcacagctcttacagtttgcagca
aaaaacattggtctgaatcctgcacttttaacctcaccaataaaccctcaacatatgacc
cttctgaatcaactttaccagctgcaactggcataccagcgtttacaaattcaacagcaa
atgttgcaggcacagcgcaatgtttctggccccattcgacaacaagagcagcaagttgca
cgtacaatcaataacatgcagcagcagatccaacaacaccagcgtcagctggcccaggct
ctgctaatgaaacagcagcaacagcagcagccatctcactctggtctgcatcctggtggg
gccaaatcttccctggattcatatccaggtcacccgcagactccagtcctacctgacctg
cagaccaaagagccgcagtcatctcccaacacctacagcccctacgctctctctggactg
aatccaaactgtattgatgtgggaagccttcctatgaaggacccaccgctaccgcagtcc
cggctgtcacagtggacacaccctaactccattgaaagcctttctggaaactcgtctcct
cttgagcccaacctgggaaaacatggtgccaacctcggcccacctggaaagcctcctcag
atagacgactcctacaacccctacaacctgatatcaagttcagagtctccgaccagcccc
ttggttcctccagagagctggggtcagggcaagaacagcagcgacaagatggccaacgga
accaatatcaactggcctccagagttttgtcctggtgtaccctggaagggtctgcagaac
atcgaccctgaaaccgaccccaatgtgactccaggcagcgtccccagtggacctacgatc
aacaccaacatccaagatgtcaaccgttacctgctccgggacagaagtggaggctcctct
cccatctcatctcagagcgaggctctgccttcgtccaccgattggccagtcagtgcctac
agtagctcgttcagtctttcttccccggagatggacgacgcaggcaaactgtcagagatg
aaatcaacctggtctccaggtcccatctctcacagccaggcgtctctgtcccacgagctt
tggaaagttccccagggtccgcggagcagcaccacggctccttcccgccccccacccggc
ctcacgaacacgaagccctcctccacctggggcgggagctccctgggtctggcccaagga
tggagcagctcttacaccacagcaggtaccacatggagtacggacagctccaccaggacc
agcagctggctggttctgaggaacctaacgccacagattgacggttccactctgcgtacg
ctgtgcatgcagcacggccccctcatcacattccacctcaacctgacgcagggaaatgct
gtggttcgctacagctccaaggacgaagccgccaaagctcagaagtctctgcacatgtgt
gtgctggggaacaccaccattctagcagagtttgccggggaagaggaggtgaaccgcttc
tttgcacagggtcagtcgctcggcgggacgaccagctggcaggccaccccgggaaccaat
cagaccagaatgggcggctccggatccggagttgctcatcccattggtcactcaccccac
tggaacaacaacaacaacagcggcggcggtggcggcggcggcagcagtggcgggctcgga
gcaggcggaactaaaacgggcggggagttgctctggggaggcgttcagcagtattccagc
ctgtggggacccccgagcggcgaggagggacgagtcatggggagccccacgccaatcaat
acgctgctgcctggcgacctgctgagtggagagtccatgtag
DBGET
integrated database retrieval system
