Poeciliopsis prolifica (blackstripe livebearer): 129363235
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Entry
129363235 CDS
T09758
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129363235 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129363235 (xab2)
03041 Spliceosome [BR:
pprl03041
]
129363235 (xab2)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129363235 (xab2)
Spliceosome [BR:
pprl03041
]
Complex B
Other components
Prp19-related factors
129363235 (xab2)
Complex C
129363235 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
SNAP
NRDE-2
TPR_MalT
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
129363235
NCBI-ProteinID:
XP_054891180
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MPSLNGRADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVHSLPLPETALRVYRRYLKLSPENAEEYIE
YLRSVGRLDEAAVRLAAIVNDESFVSKDGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDDEDEDDGQEPDEVQLEQKSVPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctaaatggaagagctgacgttatatttgaggatgacgatcttccttatgaa
gaggagattatcagaaatccatactcagtcaagtgttggatgcgctacattgaattcaaa
cagaatggtgccaaatccaccctgaacatgatatatgaacgagctctgaaggaattgcct
ggaagctataaattgtggtacaattatctgagagaaaggaggaaacaagtcaaaggaaaa
tgcatcacagatccaacatatgaagaggtcaataactgccacgaaagagcacttgtgttt
atgcacaagatgcccaggatatggattgattactgtcagttcgtcgtgtcacagtgtaag
atcacgagaagtcggagaacatttgaccgagctctaagagcactacctgtaacccagcat
ccacgaatctggcctttgtatctgcgcttcgttcacagcctgcccctgcctgaaacagcc
ctgcgggtatatcgaaggtacctcaagctatctccagagaatgcagaagagtacatagag
tacttgcggtctgttggtcgcttggatgaagcagctgtgcgattagcagcaattgtaaac
gatgaaagctttgtgtccaaagatggaaagtccaactatcagttgtggcacgagctgtgc
gacctgatctctcagaatcctgataaagtgacctctttaaatgttggagccatcatacga
ggtggcctcacacgctttacagaccaacttggaaaactttggtgctctttggctgattat
tacatcaggagtggtcactttgagaaagcacgggatgtttatgaggaagccattcttaca
gtagtaactgtaagggatttcactcaagtgtttgatagctatgctcagtttgaggagagc
atgattgctgcaaagatggagaccactgctgagatgggaaaagaggaggaagacgacata
gacctggagcttcgtctggcccgctttgagcagctaattgcccggcggccgcttctgctg
aacagtgtactgctgaggcagaatccccataatgtgcatgagtggcacaagcgagtaaaa
ctttatgaaggaaatccacgacagatcatcaatacatacactgaggcagtacagacagtg
gatccaatgaaggccactggaaaacctcattctctctgggtttcttttgctaaattctat
gaggaaaatgaacagctagatgacgccaggacaatctttgagaaggctactaaagtaaac
tacaaacaagtggatgaccttgctgcagtttggtgtgaatatggagagatggaacttcgc
catgagaattatgatcaggcactacgcatactgaggaaagctacagcaatcccatctaag
aaagcagagtactttgattcatctgagcctgttcaaaacagagtctacaagtctctgaag
gtctggtctatgctggcagatcttgaggagagtctcgggacttttcagtctacaaaagca
gtgtatgaccgcattattgatctacgcattgccactcctcaaattgtcatcaactatgcc
atgttccttgaagaacacaactactttgaggaaagcttcaaagcatatgaacgagggatt
gctctcttcaagtggccaaacgtttatgacatctggaacacttaccttaccaagttcatt
gaccgttatggcggcaaaaaattggagcgagccagagatttatttgaacaagcgctggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgccaaactggaagaggaa
tatggattggcccggcatgccatggctgtctatgaaagagcaacacaagcagtggaaact
gaagagagacaccatatgtttaacatctacatcaagagagcagctgaaatttatggtgtt
acgtacaccagagctatttaccagaaggctattgaggttcttcctgatgagcatgcgagg
gatatgtgtatgcgatttgctgacatggagtgtaaacttggggaaattgaccgtgccaga
gcaatctactcctactgctctcagatctgtgacccaagggtgacagcaaatttctggcag
acctggaaggaatttgagattcgccatggaaatgaagatacaattagggagatgttgaga
atcaagcgcagtgtccaagctacatacaacacccaggtcaacttcatgtcctcgcaaatg
cttaaggcttctacaagctctacaggcactgtttcagatcttgctcctggccagatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaagctgagcag
gacaaacccaaacccaaggagaaaattctgtttgtcaggagtgatacttctcgcagtgag
ttggctgagctttccaaacaagccaatcctgatgagataaatattgacgacgacgaggat
gaagatgatggccaagaacccgatgaggtgcagcttgagcagaagagtgttccaacagca
gtcttcggaggtcttaaagaggactga
DBGET
integrated database retrieval system
