Poeciliopsis prolifica (blackstripe livebearer): 129363387
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Entry
129363387 CDS
T09758
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129363387 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129363387 (ddx5)
03009 Ribosome biogenesis [BR:
pprl03009
]
129363387 (ddx5)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129363387 (ddx5)
Spliceosome [BR:
pprl03041
]
Complex A
U1 snRNP components
U1 related factors
129363387 (ddx5)
Complex B
129363387 (ddx5)
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
Pre-60S particles
Helicases
129363387 (ddx5)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
129363387
NCBI-ProteinID:
XP_054891452
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGSRGGGGGKFGNPGERLRKKHWNLDELPKFEKNFY
QQHPDVARRSLQEAEQYRRSKTITVKGRECPNPITQFHEASFPSYVMEVINKQNWTEPTP
IQAQGWPLALSGMDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLVSVLREANQAINPKLLQMAEERG
GRSRGGRGGDYDRRDRYSSGRRDYGGGRDRDNNRGFNNGPNKSYGVGSQNGGYGSSNGAS
NGYGGGNYNTNGQSNFGTNQAGVFAAQNNFQAQQFVPNKPVVQNGTSHPQYQFPQAQVPP
QHPPQQLAPQQHPPPPLVPYPMPPQFSQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggcagggatagagacagaggctatggcggtgga
ccaccccgattcggtggtagccgaggtggaggtggaggaaagttcggcaatccaggtgag
cggttgaggaagaaacactggaacctggacgagctcccaaagtttgagaaaaatttctat
cagcagcatcctgatgtcgcccgtagatcactgcaagaagctgagcaatacagaaggtca
aaaactattacagtgaaggggagggaatgcccaaatcccataacccagtttcacgaagca
agttttccctcttacgtgatggaggtcatcaacaaacagaactggactgaaccgacacct
atccaggcccagggttggcctttggctctcagtgggatggacatggttggcattgcacag
actggctctggcaagacactttcttatcttctgcctgcaatcgtgcacattaatcaccag
cctttcttggaacgtggggacggtccaatttgtctggtgttggcccccactcgtgagcta
gcccagcaggtgcaacaggtggctgctgaatatggcaaagcttctcgtctgaagtccacc
tgcatctacggaggcgcacccaaagggcctcagctccgtgatttggaaagaggtgtggag
atttgcatcgccactccaggcaggctcattgacttccttgaagcaggaaaaacgaacctt
cgcagatgcacttacctggtgctggatgaggcagacagaatgctggacatgggatttgag
ccacagatcaggaagattgttgaccaaatcaggcctgacaggcagactctgatgtggagt
gctacttggcctaaagaggttcgccaactggcagaagactttctgaaggagtatgttcag
atcaacattggagcactgcagcttagtgctaaccataacatcctacagattgtggatgtc
tgcaatgatggagaaaaagagaataagctaatccgtctgctggaggaaatcatgagtgag
aaggagaacaagaccatcatttttgttgagacaaaaaggcggtgtgatgacctcacccga
cgaatgagaagagatgggtggccagctatgggaatccatggagacaaaagccagcaggag
agggactgggtccttaatgagttcaaatttggcaaagcccccatactgatcgccactgat
gttgcgtccagaggcctagatgtggaagacgtgaaatttgtcatcaactatgactaccct
aacaactctgaggattatatccaccgcattggcagaacggctcgtagccaaaagacgggc
acagcctataccttcttcactcccaacaacatgaggcaggccggggacctcgtctctgtg
ctgcgcgaggccaaccaggcaattaacccaaagctcctccagatggcagaagaaagagga
ggtcgttcaaggggcggcagaggtggtgattatgaccgtcgggataggtattcctctgga
aggcgtgattatggcggcggtagggatagagacaacaatagaggatttaacaacggacca
aacaagagttatggcgtaggttctcagaacggaggctatggaagcagcaacggtgccagc
aatggatatggtggagggaactacaacaccaatggacagtcaaacttcggcaccaatcaa
gcaggagtttttgctgcccaaaacaacttccaggcccaacagtttgttcccaataagcct
gttgtacaaaatggcacaagccatcctcagtaccagttccctcaggcccaggtgcctcct
cagcatccaccccaacaacttgcccctcaacagcatcctccaccgcctctggtgccgtac
cccatgcctccacagttctctcagtaa
DBGET
integrated database retrieval system
