KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129363707
Entry
129363707         CDS       T09758                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4 isoform X1
  KO
K12881  THO complex subunit 4
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013  Nucleocytoplasmic transport
pprl03015  mRNA surveillance pathway
pprl03040  Spliceosome
pprl05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129363707 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    129363707 (alyref)
   03015 mRNA surveillance pathway
    129363707 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    129363707 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pprl03019]
    129363707 (alyref)
   03041 Spliceosome [BR:pprl03041]
    129363707 (alyref)
Messenger RNA biogenesis [BR:pprl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     129363707 (alyref)
    TREX complex
     129363707 (alyref)
Spliceosome [BR:pprl03041]
 Complex C
  Other components
   EJC/TREX
    129363707 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129363707 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 129363707
NCBI-ProteinID: XP_054891936
LinkDB
Position
Unknown
AA seq 269 aa
MADKMDMSLDEIIKQNRQQRGGGRGGRGRGRGGRVGLGGGRGGGPGRLGGGGGGGFGGRG
GGSGPMRNRQNLNRARGRPTPYSRPKQLPDKWQHDMFDNGFGGFNGSAGGGGGAGVETGG
KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQY
NGIPLDGRPMNIQLVTSQIDTQRRPMQGLVVVGGMNRNRTFGMQRGRGGRGSGFFRGRGR
GGRGGGTKPLSAEELDAQLDAYNARMDTS
NT seq 810 nt   +upstreamnt  +downstreamnt
atggccgataaaatggatatgtctctagatgagattatcaagcagaacaggcagcagaga
ggtggaggccggggaggaagaggccgcggcagaggtggccgtgtgggcttaggcggcggc
cgaggaggaggccccgggcgacttggaggcggcggcggtggaggatttggaggccgtggc
ggcggatccggccccatgaggaatcgacagaacctgaaccgcgctagaggcaggccgacg
ccttacagcaggcctaaacagctccctgacaagtggcagcacgacatgttcgacaacggc
ttcggaggctttaatggtagtgccggtggtggcggaggagctggtgtggaaactggaggg
aagctccttgtctccaatctggactttggtgtttcagacgcagacattcaggaacttttt
gctgaatttgggactctgaagaaggctgctgttcattatgaccgctcaggaagaagcctg
ggaacagctgatgtccattttgagaggagagcagatgcactgaaggccatgaagcaatat
aatggcatcccacttgatgggcgaccaatgaacattcaactcgtcacatcacagattgac
acacagaggcggcctatgcagggactggttgtagttgggggcatgaacagaaatcgcacc
ttcggcatgcaaagaggtcgaggtggccgtggttcaggtttcttcagagggagaggacgg
ggtggccgaggtggcggaaccaaaccgctttcagcagaggagcttgatgcacaattagac
gcctacaacgccaggatggacaccagttaa

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