Poeciliopsis prolifica (blackstripe livebearer): 129364000
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Entry
129364000 CDS
T09758
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129364000 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129364000 (dhx38)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129364000 (dhx38)
Spliceosome [BR:
pprl03041
]
Complex C
Other components
Step II factors
129364000 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
129364000
NCBI-ProteinID:
XP_054892323
LinkDB
All DBs
Position
Unknown
AA seq
1253 aa
AA seq
DB search
MDDDDVSMHRLEGTQPGAQVGGLIVKKKSAASEPHVFRAPTPRTSLLGLDLLAAQKRKER
EIKEQEESNGNERNRKKSKVSSYKDWEENKSDSGSDEEEDDTSSATKKERKYRVTGSETP
SNPGGVSEEFRRRHEQREKDRREQGVFASSKEDKTRDRERSKDKGRERQSERDDRDSRHS
RGNSSSRSERLERSERSERSQRDGWSERISRGSKRDEPATPQNRPRDGFTPSRSNWDEDD
SGYGSSRHSQWESPSPALSHRESDRSERSHRSGRESERRDRSVRGRYTDDTPLPTPSYKY
NEWANDRKHLGSTPRLSQGKGKKNEGGIPFDNEDEKEQWEEDQKQADRDWYMMDEGYDEF
HNPFTSTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDED
FEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPIVPVKDPTSDMAIISRKGSQLVRKHRE
QKERKKAQHKHWELAGTKLGDIMGIKKKEDEEPGGKVVGEDGKVDYRADQKFAEHMKEKS
EASSDFAKKKSILEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHEDG
YTRYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTMIKYMTDGIL
LRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKFA
AFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQEDI
EVTSDQIVERLEDLENAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLT
VDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQSA
YKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGAL
DNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGREEE
SDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIMV
QQKMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYT
PDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEELSNME
QEMVLAQEQLRARREEQEKKSNTSSVRAVKICTPGRKEEAPMTPRRTPARFGL
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgacgtgtccatgcataggctggaagggactcagcccggtgctcaagtt
ggaggtctgatagtaaagaagaagagcgctgcttcagagccacatgtttttcgggcacct
acaccacgcacctctttgctgggcttggacctgctggctgcgcagaaaaggaaggaacgg
gagattaaagagcaagaagagtctaatggcaatgaaagaaacaggaagaagtcaaaggtt
tcctcctacaaagattgggaggaaaataaaagtgactccgggtctgatgaggaggaggat
gatacaagtagtgccacaaagaaggagaggaagtaccgtgttacaggctctgagactccc
tccaatcctggaggcgtcagtgaagagtttagacgccggcatgagcagcgggagaaagac
aggcgtgagcagggagtctttgcttcctccaaggaggacaagaccagagacagagaaagg
agcaaagataaaggaagggagcgacagagtgagagagacgatcgagacagtagacatagt
cggggcaacagtagcagccggtcggagcgcttggaacgcagtgagaggagtgagcgctca
cagcgagatggctggtccgaacgcatcagcagagggagtaagagagacgaacctgcgaca
ccacagaatcgccccagagatggttttacaccttcccgatctaactgggatgaggacgat
agtggttatggtagctcacggcattcccagtgggagtctccatctccagctctctctcac
agggagtccgatcgctctgaaagaagccatcgttctgggcgagagagtgagaggagggac
agatcagtcagaggccgttacactgatgacacacccctgcccaccccatcctataagtac
aacgagtgggcgaatgatagaaagcatttaggctccacacctcgtttgtcacaagggaaa
ggcaaaaaaaatgagggaggaataccttttgataatgaggatgagaaagaacagtgggag
gaggaccaaaagcaagctgacagagactggtacatgatggacgaaggctatgatgagttt
cacaaccctttcacctccacctctgaagaatatgtgaaaaagagagagcagatcctccag
aagcagactcaaaaaagaatatctgctcagaagcgacagatcaatgaggataacgaacgc
tgggagacgaaccgcatgttgaccagtggtgttgtgcaaaggctggaggtggatgaagac
tttgaggaagacaacgctgctaaagttcacctgttggttcacaatctggttccccctttc
ctggatggaagaatagttttcacaaagcagccagagcccatcgtccctgtgaaagatccc
acctctgacatggccatcatctctcgaaagggaagccagcttgtccgtaaacatcgtgag
caaaaggaacgcaaaaaggcacagcacaaacactgggaattggcaggcaccaagttaggc
gatataatgggtatcaagaagaaagaggatgaagaacctggaggcaaagtggtgggagag
gatggcaaagtagactacagggctgatcagaaatttgctgagcacatgaaggagaagagt
gaagccagcagtgactttgctaagaagaagagcattctggagcagaggcagtacttgcct
atatttgccgtcaggcagcaacttctcaatatcataagggacaacagcatcgtcattgtt
gttggagaaacaggaagcggtaagaccacccagctgactcagtacctgcatgaagacggc
tacactcgctacggcatggtgggttgtactcagccccgacgagtggccgccatgagtgtg
gccaaaagagtcagcgaggagatcggcaccaaccttggagaggaggttggatacgcaatc
cgctttgaggactgcacttcggagaaaacgatgataaagtacatgactgacgggattctg
ctgagggagtctctgcgggagtcggacctggaccactacagtgcagttattatggacgag
gctcacgaacgctccctcaacacagacgtgctgtttggcctcctgcgggaggttgtatct
cgacgaactgacctgaagctcattgtgacttctgctactatggactcagacaaatttgca
gcattttttggcaatgttcctattttccatattccaggaagaacatttccagttgacata
ttgttcagcaagaccccacaggaggactatgttgaggctgcagtgaagcaggctctgcag
atccacctcagtgggatggtgggagacatcttgatctttatgccaggacaggaagatata
gaggtaacatcggatcagatcgtggaacgcctggaagacttggagaacgctcctcctctg
gctgtgctgcccatttactcacaacttccttctgatctccaagcgaagatcttccagaag
gctccagacggtgtcagaaaatgcattgttgccacaaacattgcagagacgtcgctcact
gtggatgggatcatgtttgttgtggattcaggctattgcaaacttaaggttttcaaccct
cggatcggtatggatgctctccaggtttaccccatcagtcaggctaatgccaaccagcgt
tctggccgagccggacgtacaggaccaggccagtgttacaggctttacactcagagtgcc
tataagaatgagatgctgaccaccaccatcccagagatccagagaacaaacctggccaat
gtggtcctgctgctgaagtctctgggggtccaggacttgctcctgttccacttcatggat
ccaccgcctgaggacaacatgctcaactccatgtaccagctctggatcctgggagctctg
gacaacacgggtgctctgaccccaacggggcgtctgatggtggagtttccactcgacccc
gccctctcaaagatgcttattgtgtcctgtgacatgggctgcagtgcagacatcctcatc
atcgtctctatgttgtctgtgccggccatcttttacagacctaagggtcgtgaggaagaa
agcgaccaggtgagggagaagttctcagtccctgagagtgaccacctcacatacctgaac
gtctacatgcagtggaagaacaacaattattccagcatctggtgcaacgatcacttcatc
cacaccaaggccatgcgcaaggtgcgtgaggtgcgttcccagttaaaggacatcatggtt
cagcagaagatgaaccttatatcctgtggctcagactgggacatcatcagaaagtgtatc
tgtgctgcttacttccaccaggcagccaagctcaagggcattggtgaatatgtgaacgtg
aggactggcatgccatgccacctccatcccaccagctccctgtttggtatgggctacacc
cccgactacatcatctaccatgagctcgtgatgactacaaaggagtacatgcagtgtgtt
actgctgtggacggagagtggctggcggagctgggacccatgttttacagcatcaaacat
gcaggaaagagcagacaggagaaccgtcggcgggccaaagaggagctgagcaacatggag
caggagatggtcctggctcaggagcagctgagggcgcgtcgagaggagcaggagaagaag
agcaacaccagcagtgtgagggcagtgaaaatctgcacaccagggagaaaagaggaggca
cccatgacacccagacgcaccccggcccgctttggactgtaa
DBGET
integrated database retrieval system
