Poeciliopsis prolifica (blackstripe livebearer): 129364304
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Entry
129364304 CDS
T09758
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03420
Nucleotide excision repair
pprl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129364304 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
129364304 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprl04121
]
129364304 (ddb1)
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129364304 (ddb1)
Ubiquitin system [BR:
pprl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
129364304 (ddb1)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
129364304 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
129364304 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Glyco_trans_4_2
Motif
Other DBs
NCBI-GeneID:
129364304
NCBI-ProteinID:
XP_054892843
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVTVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHKQLIQITSGSVRLVV
QDSKALVSEWKEPQGKNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEGGNESTLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYSLSIVSCRLGKDPSVYFIVGTAMVYPEE
PEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLTKVIKSVGKIEHSFWRSFHTER
KTEQGTGFIDGDLIESFLDLSRAKMQEVVSTLLIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcttataactacgtggtaacagctcagaagcccacggcagtgaacgcctgcatcaca
ggtcacttcacctctgctgaggaccttaatttgctcatcgctaaaaacacacgtttggag
atctatgtggtcacagctgagggacttagacctgtcaaggaagttggcatgtatggcaaa
attgctgtcatggaactcttccgtccaaagggtgagagcaaagacctactgttcattctc
acatccaagtacaatgcatgtatcctggaatacaaacagaacggggagagtattgacata
atcacccgtgcccatggcaacgtccaggatcgcattggacgtccatcagaaacagggatt
attgggattgttgacccagaatgccgcatgatcggtctgaggctgtacgacggattgttc
aaggtgatcccattggaccgggacaaccgagagctaaaggcgttcaacatccggctggag
gagctgcaggtcatcgatgttcacttcctgtatggctgccaggctccaaccgtctgcttc
atctaccaggaccctcaaggacgtcatgtaaagacctatgaagtttctctgagagaaaag
gagttcaacaagggcccctggaaacaggagaatgtcgaggctgaagcatccatggttatt
ccagtgccggagccatttggtggcgctataatcataggacaagagtcaatcacctaccac
aatggggacaaatacctggccattgctccaccaacgatcaagcaaagtaccattgtctgc
cacaaccgggtggaccccaacgggtcgcgctacctgctgggagacatggagggtcgtctg
ttcatgctgctcctggagaaggaggaactaatggacggcaccgtggctctgaaggacctg
catgtggagttgctgggagagacctctatagctgagtgtttgacctacctggacaatggt
gtggtgtttgttggatccagattaggagactcccagcttgtgaagcttaacgtggacagc
aatgagcagggctcctacgtcacagtaatggagacgttcaccaatctggggcccattgtg
gacatgtgtgtggtggatctggagaggcagggtcagggccagctggtgacatgctctgga
gcgttcaaggagggttctctgcggatcatccgcaacggcattgggattcacgagcatgcc
agcatcgacctgccgggaatcaaaggcttgtggccacttcgctctgaggcaggccgcgag
acagatgatatgttggtactgtctttcgtgggtcagacgagagtgttgatgctgagcggg
gaggaagttgaagaaaccgagctgccaggttttgtagacaaccagcagacattttactgt
ggaaatgttgcacacaaacaactcattcagatcacatcaggctctgtgcgcttggtggtc
caggacagcaaggccttggttagtgaatggaaggagccgcagggcaagaacatcagtgta
gccgcctgcaatcacacacaagtggtgcttgctgtgggacgagccctgtactacctgcag
atcctcgcaggagagctcaaacagatcagcaccacagagatggagcatgaggtggcctgc
ctggacatcacacctctgggggagggtggcaacgagtccacgctctgcgctgtgggactg
tggaccgacatctctgcccgtgtgctcaaactgccctgtttcacggctctgcacaaggaa
atgctgggcggagagatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctgtgtgccctgggagatggagcactcttctactttggtcttgacctacagact
ggagccctcagcgagcgcaagaaggtcactcttggcacgcagcccactgtgctgcggacc
ttcagatcgctgtccacctcaaacgtcttcgcttgctccgaccggcccactgttatctat
tcgtccaaccacaagctggtgttttccaacgtgaatctgaaggaagtcaattacatgtgc
ccactcaactctgagggctacccagacagtctggctttggctaacaacagtacgctgacc
atcggcaccattgatgaaattcaaaaactccatattcgcacagttcccctctatgagtct
ccaaggaggatctgttaccaggaggtttcacaatgttttggggttctgtccagccgggtg
gagatccaggatgttagcggcaccacatctgctgtacggcctagtgcaagcacacaggcg
ctctccagcagcgtgagctcaagcaagctcttccccagcagcacttctccacatgagacc
tcctttggtgaggaggtggaggttcacagtctgctcgtcgtggatcaacacacttttgaa
gtccttcatgcccatcagttcctccccagcgagtattctctcagcattgtgtcatgtcgt
ctgggaaaagacccatctgtttacttcatcgtcggcacggccatggtttacccagaggag
cccgagcccaagcagggtcgaatcattgtcttccattacaccgacgggaagctgcaaacc
gtggctgagaaagaagtgaaaggagctgtctattctatggtggagttcaatggaaaactg
ctggccagcataaatagcacagtccgtctgtacgagtggacggccgagaaggagctgagg
accgagtgcaaccactataacaacatcatggcgctttacctgaagaccaaaggggatttc
atcctggtgggagacctgatgaggtctgtcctgctgctggcgtacaaacccatggagggc
aactttgaagagattgctcgtgattttaatccaaactggatgagtgccgtggaaattcta
gacgatgacaacttcctgggagcagagaacgcctttaacttgtttgtctgccaaaaagat
agtgcggccaccactgacgaggagcgccagcatctgcaggaggtcggggtctttcaccta
ggcgagtttgtaaatgtgttttgccatggctcactggtgctacagaacctgggagagagc
tccacacccacccagggatccgtactcttcggcactgttaacggcatgatcggtctggtg
acatctctgtccgagggctggtacagcctcctgcttgacctacagaaccgcctcaccaag
gtcatcaaaagcgtgggcaagatcgagcacagcttctggaggtctttccacacggagcgc
aagacggagcagggcacaggcttcatcgacggggacctgattgaaagcttcctggatctc
agtcgggcaaagatgcaggaggtcgtcagcactctactgatcgatgatggcagcggcatg
aaacgtgaagccacagtggatgaggtgattaagatcgtggaggagctgacgaggatccac
tag
DBGET
integrated database retrieval system
