Poeciliopsis prolifica (blackstripe livebearer): 129365175
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Entry
129365175 CDS
T09758
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129365175 (scaf8)
03041 Spliceosome [BR:
pprl03041
]
129365175 (scaf8)
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129365175 (scaf8)
Spliceosome [BR:
pprl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
129365175 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
PRP38_assoc
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
129365175
NCBI-ProteinID:
XP_054894144
LinkDB
All DBs
Position
Unknown
AA seq
1381 aa
AA seq
DB search
MEAVKAFNNELYTLTEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIITTFQHLYRCPPDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSTTPVLPSSAAPINNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERSEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMNMEGQDSIFGQENSVATAQSSTQPQLPEPENKM
DDSIDNQQQDMDLDEGPEGMEEIFEAEEKKTLSTRSRTRSRSRSRSPKRRRSRSRSGSRK
RKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQV
DKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSFKIGSKII
KIAWALNKGVKQEYKQFWDADLGVTYIPWEKVKLDDLDGFAEGGIIDQETVNDEWETTKT
LEPAKEIASQAVSTEATVVSNTQTESYNQQVTMMPVQLPVAQAVPGAMGLVPPTFPVTMG
IPPPGYGPPPPFLRPGFNASQPPPGFMQAPHTAGIASVTTSLVQPSVASNQDAVMPPTST
IPSSFLPSGIPGAGVFNPVGVQTQQGNNDKIPPSTEGMDAAAELTLQGMQNAVRSGMGLL
GMHPSASLPHPLHQTGLSAPRMPGLLPLDVRPNLLQPGAAARFPLLMQQGPPQQASGLLD
NSLHARPRAPFPQMDPFNRAPNLSNENVSKMEDESSGADEGKDQDYRFPPMEKPSTGLLP
TPPPEHREPLAGGGGVPGGGRPPLLQTPGTQPPRSSLVGRLQALAGFTPDSRWNQGKGDF
DERDGMRGGPQPPGGPKGFQDERPPPGPNFPNRFDNRPGVTGGPTGVNAGPVGGPQPWNR
GGGPTPPFNSEHHKDLDDRRRPWERQRDRDEREFDFRRDVNGNRHHRERERERERDRDRD
RDRGRDRPRESDRDRDHEKEKERGGWTPILPLPTPLLPTPPINPNMALNQGKLLAPLKLN
PQVPSVFQSHGQAKPSLLSQPPPQLQIRSSPTSLNPLPVSDTKEETQVPAATPEAKSPPF
AGSPHRSSDGQIPSTSTEPLSQSEPSHPDTSPQMKSPPQAIAQATPETTASPDGERPRHD
SPLGFSHANNPQQDGHHTAEKQEEPQEDEKGALERAPIPEPLWLNGPGQHSVSMAELTPE
SSPEPESTSSPACHSLQLQSEPELRQEKMSSPKDLNNEQSEPQEDAPSQPVVDTVTDTEG
T
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaacgagctgtacacattgactgagtacaagccaccc
atctctaaggccaagatgactcagatcaccaagtcaggaatcaaggccataaaattctac
aagcatgtcgtccagagtgtagagaagttcattcagaagtgcaagccagaatacaaagtc
cctgggctgtatgtcatcgactccatagtcagacaatcccgccaccagtttgggacagag
aaggatgtttttgctccacggttcagcaagaacatcatcacaacgttccaacacctttat
cgctgccctccagatgacaagagtaagatagtgcgagtcctgaatctgtggcagaagaat
gctgtcttcaagagcgacatcatccagcctctgttggacatggctgcagggattccccct
cccagtacgacacctgtcctgcccagcagcgctgcaccgatcaataacactacacctggc
accccagctacgcccgccactcctgcaaatatagtccaaggtctgccagactgggcctcc
cagatcacaaacacagatactgttgctgctgttgcacaaatcctgcagagtccccaggga
caacagcttcagcaactagtccagagtctgcagatgcagcagcagaagccccagccttcc
ctgctgcaggccttggatgctggcctggtggtccaattacaagctctgacagctcagctc
actgctgccgctacagccaacagcctcaaccccctggagcaaagggtctcctcttttaat
aagaaactgttgggtccttttgactttggaaacgattcagaacgcagtgaggaatctaaa
aaggactcctcatcttctcagctgcccatggtgtctgaacctattaacagctcacttttt
catcaactggctgagcaactccaacaacaaaatctggagcagtttcagaagcagttgcta
gagcaccagcagaaggccatgaacatggaagggcaggattccatctttgggcaggaaaac
tcggtggcaactgctcagagcagcactcagcctcagcttcctgagccagagaataaaatg
gatgactccatagacaaccaacagcaggacatggatctagatgagggccccgagggaatg
gaggagatctttgaagcagaggagaagaagaccttaagcacacgttctcggacacgctca
aggtcacgctctagatctcctaaacgtagaagatccaggtcccgctccggttcacggaaa
cgtaaacatcgcaagcgatcacgctcccgctccagagatcgcaagaggaagtcatcacgt
tcttactccagtgaaagacgagcacgagaacgagaaaaggaacggcagaagaaaggatta
ccacccatacggtccaagactcttagtgtgtgtagcactacactgtgggtgggccaggtg
gataagaaggccactcagcaagacctcaccaatctgttcgaagagtttggccagattgag
tccatcaacatgatcccacccagaggctgcgcctacatatgtatggttcacagacaggat
gcgtaccgcgcccttcagaagctcagcactggttcctttaaaatcggctccaagatcatc
aagattgcttgggctctgaacaaaggtgtaaagcaagagtacaagcagttttgggatgca
gaccttggtgtcacctacatcccatgggagaaggtcaaattggatgacttggacggcttt
gctgaaggagggattattgatcaagaaactgtcaacgatgagtgggaaacaaccaagact
ttggaaccagccaaggaaattgcaagccaagcggttagcactgaggccacagtggtatct
aatacccaaactgagtcttacaaccagcaggtcactatgatgcctgtacagctgccagtg
gcccaagcagttcctggagccatgggtttggtgcctcctacgtttcctgtcacaatgggc
atacctccacctggctatggaccgccgccaccatttttgagaccagggttcaacgcctct
cagcctccaccagggtttatgcaggcaccacatacagcaggaatagcctctgttaccaca
tctctcgtgcagccttccgtggcctctaaccaagatgctgtgatgcctccaaccagcacc
attcctagtagcttcctgccatcgggcatcccaggagctggtgtttttaacccagtggga
gtccaaactcagcagggcaacaacgataaaattccaccatctacagagggcatggatgct
gctgcagagctcacactacaaggcatgcagaatgcagtccgcagtggaatgggtctcctt
ggaatgcacccctcggcttcactaccccatccactacatcagacgggtctgagtgctcca
cgaatgcccggcttgttgccgcttgacgtacgacccaacctccttcaacccggggcagct
gcccgtttccccctcctcatgcagcagggaccccctcaacaagcatccggcctccttgac
aattcccttcatgcccgtcccagggctcctttccctcagatggatccattcaacagagcc
cccaacctctccaacgaaaatgtctctaaaatggaagatgagtcctctggagcggatgag
ggcaaagatcaagattaccgcttcccaccgatggaaaagcccagcacaggcctcctgccg
acccctccgccagagcatagggaaccacttgcaggtggcgggggagttccaggaggagga
agacctccattgcttcagacccctggaactcagccaccgaggtccagcttagtggggcgt
ctgcaggctctggcaggattcactcctgatagccgctggaaccaaggcaaaggggacttt
gatgagcgagacggcatgcgaggaggaccgcagcccccaggtggtccaaaaggttttcag
gatgagcggcctccacccggtccaaacttccccaaccgctttgataaccgacctggcgtt
acagggggaccaacaggtgtaaatgctgggcctgttggggggccacagccctggaacaga
ggaggtggacccacacctcccttcaacagtgaacatcataaagatctagatgatcgaaga
cgtccatgggagaggcaaagagaccgagatgaacgagagtttgactttaggagagacgtg
aacggtaatcggcatcaccgcgagagagaacgggaacgagagcgcgacagagaccgggac
agagaccgaggtcgagaccgccccagggagtctgaccgtgacagagaccatgagaaggag
aaagagcgtggaggctggacgcctatccttccactaccaacaccgcttcttcccactcct
cccattaatcccaacatggcacttaatcaagggaaacttcttgctcctcttaagttaaac
ccccaagtcccatcagttttccagtctcatggtcaggccaaaccttcgctcctgagtcag
ccgccccctcagcttcagattaggtcttcacccacatcactgaaccccctacctgtttct
gacacaaaggaggaaacccaagttcctgctgcaacacctgaggcgaagtcccccccattt
gctgggtcaccccaccgctcttctgatggccagattccgagcacatcaaccgaacccctc
tctcagtctgagccatcccacccagacacctctccacaaatgaaatcaccacctcaggcc
attgcccaagcaaccccagagaccaccgcctccccagacggcgagaggccacgccatgac
tcacctctaggcttctctcatgccaacaacccccaacaagatggccatcacactgcagag
aagcaggaggagccacaggaggatgagaaaggggcactagagcgagcccccattcctgaa
cccctgtggcttaacggaccgggtcagcacagtgtcagtatggccgagctcacaccagag
tcctctcctgagcctgagtccacttcgagccccgcctgtcattctttgcagcttcaaagc
gaaccagagctgcggcaggagaaaatgtcgtctcctaaggacctaaacaatgaacagagt
gagccccaggaggacgctcccagtcagccagtggtagacactgtcacagacactgagggg
acataa
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