Poeciliopsis prolifica (blackstripe livebearer): 129365676
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Entry
129365676 CDS
T09758
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pprl03009
]
129365676 (ighmbp2)
03012 Translation factors [BR:
pprl03012
]
129365676 (ighmbp2)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129365676 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
129365676 (ighmbp2)
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
Other ribosome biogenesis factors
129365676 (ighmbp2)
Translation factors [BR:
pprl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129365676 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
AAA_16
nSTAND3
UvrD-helicase
AAA_22
NAT10_TcmA_helicase
IstB_IS21
SLFN-g3_helicase
HEM4
nSTAND_NTPase5
DnaB_C
PhoH
SRP54
AAA
Zot
Flavi_DEAD
NPHP3_N
AAA_31
ATPase
AAA_25
nSTAND6
ABC_tran
Motif
Other DBs
NCBI-GeneID:
129365676
NCBI-ProteinID:
XP_054895009
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MAVEKFVCKTLELLQEEREAEIEETKIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VIILEPRKHLGFSSLPSNSFGPGDIVGIYDPSGCSAASQICTGIVTRISQASISVAFDDL
KDGVSFDSDGLYNLLKLANDVTYKRMKRALNALNGYRTGPASCLIHVLFGDAQPSSYSQS
NEFEFFNSELDDSQREAVAFALSQRELAVVHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
ASNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
ALVGMKKKSEKGERGNFKREIGELRKELKSRETTAIAEILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQTAAAKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMEWASKEMYNGRLTAHSSVEKHVLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEIADEQSKGNQGEVDIVSLHIKTLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPEMEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVRNHAFLKSLVDHMTEVGEVRTAFEYLQDIVPQNYTRDHKDTKTNT
SSTSSKQKSRDQAPGKAKEGQKMTSSCKNNTSGSQNHTKSHTPVQKDQKDKSRYAEIRLQ
VENFMKDVNMKNLQFPSTFNSHDRLLVHQIAEELGLIHESRGEGGGRCITVSRPVALEPV
EEPTQEESQEEEPAPALQSEPPPSQPLVDLKTLHLERMQREQRKREENVQQKKQNCNSAA
QGTKKSKGLSQTIWKCYNSSAHRITLDYFPSGKNKTKAGACDIAAAAVPDDDFDALISAV
VKADSVCSFVKCKASVLTLGQLCIFCNRQFCLSHHIPEVHGCGDKAKSHARMRISKEGVL
YAWSGKKDKSLDPNKKVYLQRKLDSKLKDMASQRKPKNKEKDT
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggagaaatttgtgtgcaagactctggagcttcttcaggaggagcgggaggct
gaaatagaggagaccaagatatggcaggagaatatttccttgaaggatcttcagaataaa
ggagtttgcctgctgaagcttcagatagggagtcagtccaccggcctatacggtcgcacc
gtcatcattttagagcccaggaagcatcttggcttctcctcacttccgagcaacagcttt
gggccaggcgatattgttggcatatatgatccttctggatgcagtgcagcctcacagatt
tgcacagggatagtaacgaggatcagccaagcttctatcagtgtggcctttgatgacctg
aaggatggagtcagttttgattcagatggtctttataatctcttgaagctggccaatgat
gttacttacaaacggatgaaacgggccttaaatgcattaaatggctacagaaccggacca
gcttcctgcctgatacatgttctctttggagatgcgcaaccttcttcttactcacagtca
aatgagtttgagttctttaattccgaattggacgattcccagagagaagctgtagccttc
gctctttcacagagagagctggctgtggttcatggacctccaggcacaggaaaaaccacc
acagtggtagaaatcatcctgcaagctgtgaaacaaggccagaaggtcctgtgttgtgct
gcctcaaatgttgctgttgataatttagtggagaggcttgctcgctgtaaagccaaagtc
ctgagattgggccaccccgccagactactggaatccatccagaaacactcactggatgcc
atcctcgctcagagcgacaacgcaaacatcatcgccgacatccggaaagatatcgacaaa
gcattggtggggatgaaaaagaaaagtgaaaaaggagagcgaggaaactttaaacgtgaa
ataggagagctgagaaaagagctaaaaagcagggagacaacagccattgctgagatcctg
aagagtgctgatgtcgtgttgtccacaaacaccggtgcatgtgacgacggtcctctgaag
ttcctgccggcagagcattttgattgggtggtgattgatgagtgtgcacaggccctggag
agcagctgctggatcgctttactcagggcgcgcaaatgcatcctggctggagactacaag
cagttaccaccaaccatcaaatcacaaacagctgcagctaaaggcctgtccctgagtctc
atggagagacttattcagatgtatggggactcagtggtccgtatgttaacagttcagtac
cgcatgaacagtgctatcatggaatgggcctccaaagagatgtacaatggacgattaacc
gctcacagctccgtggagaaacatgtattaaaagatctgccaggtgttgcctgcgtcgaa
gagaccagcacaccacttcttctgattgataccgcaggatgtggactgagcgaaatggag
attgcagacgagcagtccaaaggcaaccaaggtgaggtcgacattgtttcactacatata
aagaccttgacggaagctggagtaaaggccaaagacattgcagttattgctccatataat
ctacaagttgatcttctgcgtcagaagctttctgcacgtcacccagaaatggaaataaag
tctgtggacggatttcagggcagagaaaaagaagctgttgtgttgtcgttagttcgctcc
aacagaaaaggtgaggtgggttttcttgcagaggacagacggataaatgtcgccgtcaca
cgcgcaagacgtcacatcgcggtagtgtgcgacacgcagacagttaggaatcacgctttc
cttaaatctctggtggatcacatgaccgaggtcggtgaggtcagaactgcattcgagtac
ctgcaagatattgtgccgcagaactacacccgggatcataaagacacaaagaccaacact
tcctccacgtctagcaagcagaagagtagagatcaggctccaggtaaagcaaaggaaggc
cagaaaatgaccagcagctgtaagaacaacacttctggttcacagaatcacacaaagtcc
cacacaccagtccagaaagaccaaaaagacaagagcagatacgctgagatcagactgcaa
gtggagaattttatgaaggatgtaaatatgaaaaatttacagttcccatcaaccttcaac
tcgcacgatcgcctgctagtccaccagatcgctgaggagctgggcctcattcatgagagc
agaggagagggcggcggcaggtgcatcactgtctcccggcccgtggcattggaacctgtc
gaggagccgacgcaggaggaatcccaagaggaagaaccagctcctgctctgcagagtgag
ccgccaccatcccaacctttagttgatctgaagacgttacatctggagagaatgcaaagg
gagcagcggaagagggaggaaaatgtccagcaaaaaaagcagaactgcaactctgcagct
cagggaacaaagaagtctaaaggtttgtctcaaaccatctggaagtgttacaactcatct
gctcacaggataactctggattatttcccctcaggaaagaacaaaacgaaggcaggggcc
tgtgacatcgctgccgccgctgttccagatgatgactttgatgctctcatcagcgctgtc
gtgaaagctgacagtgtttgcagttttgtgaaatgcaaagcatctgtgttaacactcggc
cagctttgcatcttctgcaatcggcagttctgtctcagtcatcacataccagaggttcat
ggctgtggagataaggcaaagtctcacgctcggatgagaataagcaaagaaggggttctt
tatgcctggagtggaaagaaagacaaatcgttggaccctaataagaaagtgtacctacaa
agaaaactggactctaagctgaaagacatggcatcgcaaaggaaaccaaaaaacaaggag
aaagatacttaa
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