Poeciliopsis prolifica (blackstripe livebearer): 129366420
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Entry
129366420 CDS
T09758
Symbol
whrna
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pprl03037
]
129366420 (whrna)
Cilium and associated proteins [BR:
pprl03037
]
Primary cilia and associated proteins
USH complex and associated proteins
129366420 (whrna)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
HHD_RTEL1
T15H9-4_C
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
129366420
NCBI-ProteinID:
XP_054896226
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MSSTDLERMSLSSSANSVASSARTLSANVRKLHNALNLLLSDLEREQFIHCLNVYHSKRN
VYDLVQTLNVILNAPSKRQLLPMLRLVIPRSDQLLFEQYTSEGLYLKSDLVANNGHAEPP
PSCSPTPPGNRSPSIPPDFQVALRGSPDSFSTSSDGTAGAPLVPLLGRNFIHEPPGELRQ
VTMKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKQGLRIGDQIMKVNDKVFEKVT
HAEAVKVLKGSKKLNLSVRSVGRIPGGYVTNHVYTWVDPQGRSVSPPPDLPEHRSATLRR
TDSQRRSNMQLLQEGDEKKVNLVLDDGRSLGLMIRGGAEYALGIYITGVDKGSAAECGGL
KCLPAPPSPPGSAPPTTPLFSAPSPQVGDQILEVNGHNFLSIPHDEAVRVLKSSRHLMMT
VKDVGRLPHARTVVGETKWIASSQIAESSANSSVASFSVDQGASAAGKPGFYKGVAGSQV
TLSSLVNQSRAMLEEQARHLLTEAERQTMSYYVEEYRDGHIGIEPLVMALFELLNTHAKF
SLLSEVRGLVTPQDLERFDGLVLRREIQALKARQGTAGAANAQPDCLSMVSFPDTLTSSS
ASFLTNTTLSSARNDSVAESNEADPPESLNTLLTDISLDDVQSASAESPPSFKPPPPPGS
QRRPGRRDALIKCPSSESSQSGLYFTAPSSSSAPRSDASRDYAAIKKKMPKKEKITSAQL
ASVSQHNIGPFPRVQSPNRAPKPATPSPSPPPPPPLPAPPPPPLLPSKPVSQSKASLGLP
AASKQQFVTVEVHRPNAEPDVNEVRPLPQARGGALSQLSDSGQTLSEDSGVDIAESGHVS
KDGSPRCSAARPAHHSQDGGGENPSKPPGLLEPTSTLVRVPKSASTLGIAIEGGANTRQP
LPRIVTIQRGGSAHNCGQLKVGQIILEVNGVSLRGREHRDAARLIAEAFKTKERDHVDFL
VTEFNVAL
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaccgacctggagcgcatgtcgctcagctcctcggccaactcggtggcctcc
agcgcccggacgctgtcggccaacgtccgcaagctgcacaacgcgctcaacctgctgctc
agcgacttggagcgggagcagttcatccactgcctcaacgtgtaccactccaagcgcaac
gtgtacgacctggtccagacgctcaacgtgatcctgaacgcgcccagcaagcggcagctg
ctgcccatgctgcggctggtcatcccccgctccgaccagctgctcttcgagcagtacacc
tcggaggggctttacctaaagtcggatttagtcgcgaacaatggccacgccgaacccccg
ccgagctgcagcccgactccaccggggaaccggtcgccgagcatcccgccggacttccag
gtggcgctgcggggctccccggacagcttcagcaccagcagcgacgggacggccggggcg
ccgctggtgccgctgctcggccggaacttcatccacgagccgccgggcgagctccggcag
gtcaccatgaagcgccacaagagcaacgagggcctgggattcagcatccgcggcggctcg
gagcacggggtcgggatctacgtgtccctggtggagcccggcagcctggcggagaagcag
gggctccgcatcggggaccagatcatgaaagtcaacgacaaagtgtttgagaaagtcacc
cacgctgaagcggtgaaggttctgaagggcagcaagaagctgaacctgtctgtgcgttcg
gtcgggcggatccccggcggctacgtcaccaaccacgtttacacctgggtggatcctcag
ggtcgcagcgtgtctcctcctccggatctacccgagcatcggagcgccacgctgcggcgg
accgacagccagcggcgcagcaacatgcagctgcttcaggagggagacgaaaagaaggtg
aacctggttctggatgacggacggtctctgggcctgatgatccgaggaggagctgaatac
gcgctgggaatctacatcaccggagtggacaagggatcggcagcggagtgcggaggactc
aagtgtctgcccgctccgccctcgccgcctggctcagcccctcccaccacgcctctcttc
tccgctccgtccccgcaggtcggcgaccagatcctggaggtcaacggccacaacttcctc
agcatcccgcacgacgaggccgtccgcgtgctcaagtcgtcgcgccacctcatgatgacg
gtgaaggacgtggggcggctgccgcacgcccgcacggtggtgggggagaccaagtggatc
gccagctcgcagatcgcagagagctccgccaacagcagcgtggccagcttctctgtggat
caaggagcttctgcagcaggaaagcccgggttctataagggcgttgccggctctcaggtg
accctgtccagcctggtcaaccagtcccgcgccatgctggaggagcaggcgcgccacctg
ctgaccgaagccgagcgtcagaccatgagctactacgtggaggagtacagggacggacac
atcggcatcgagccgctggtcatggcgctgttcgagctgctcaacacgcacgccaagttt
tccctcctgtcggaggtgagagggctggtcacgccgcaggatctggagcgcttcgacggg
ctggtgctgcggcgagagatccaggccctgaaggcgcgtcaggggacggcgggcgccgcc
aacgctcagccggactgcctgtccatggtgtcgtttccagacacgctgacgtcgtcctca
gccagcttcctgaccaacacaacgctcagctctgcgcggaacgacagcgtggcggagagt
aacgaggcggatcctccggagagcctgaacacgctgctgaccgacatctctctggatgac
gttcagtccgcctcagcagagtcgcccccctccttcaagcctccgccccctccggggtct
cagaggcgcccggggaggcgggacgctctcatcaagtgcccgtcctccgaatcctcccag
tccgggttgtacttcacggccccgagctcttcttctgcgccgagaagcgacgcctcccgg
gactacgccgccatcaagaagaaaatgcccaagaaggagaaaataacgtcagcccagctg
gcctccgtctcccagcacaacatcggcccgttccccagggtccagtcgcccaacagagcc
cccaaaccggccaccccgtccccctcgcccccgccgccgccgccacttcctgccccgcct
cctcctcccttgcttccctctaagccggtgtcccagtccaaggcctccctcggtctgcct
gccgcctccaagcagcagtttgtgacggtggaggtccacaggcccaacgcggagccggac
gtcaacgaggtgcggccgctgccccaggctagaggcggcgccttgtctcagctgtccgac
agcggacagaccctcagcgaggacagcggcgtggacatcgccgagtcgggacacgtcagt
aaagacggtagcccccgatgctcagccgcacgccccgcccaccactcccaggacggcgga
ggggaaaacccgtccaaaccgccggggcttttggagcccacctccacgctagtgagggtc
ccaaagagcgccagcacccttggtatcgccatcgagggcggagccaacactcgccagccg
ctgccgcgcatcgtcaccatccagagaggcggctcggcccataactgcggccagctgaag
gtgggtcagatcatcctggaggtgaacggggtttccctcaggggccgagagcaccgggac
gccgctcgcctcatcgccgaggccttcaagaccaaagagagggaccacgtcgacttcctg
gtgacggagttcaacgtggcgctatag
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