Poeciliopsis prolifica (blackstripe livebearer): 129366571
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Entry
129366571 CDS
T09758
Symbol
si:ch211-196i2.1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129366571 (si:ch211-196i2.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129366571 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129366571 (si:ch211-196i2.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
129366571
NCBI-ProteinID:
XP_054896493
LinkDB
All DBs
Position
Unknown
AA seq
1784 aa
AA seq
DB search
MSLWTLWTLCLLGSVTRCAASPELDSGGGSGSGMLPTEELNILQELSLQVSDRSNSSLTV
EGASCPVIRVGQYATLTLPMHQIFSDRFSDEFSLLVQLRSRQRDEQSVFTVLSPDSHITL
QVRISAYAIIFIGTQQRHYEFPISGLCDGDWHRVAFSVSRNRLQLFVDCSLLESVDWVNH
GLDIGSDGLLMVGGILESFETPFEGELHQLSFLLDDPDGAQQHCSHHPPRCSRSAPKPPR
SPRTNVLENESQRQELSRGDGTIPSRPNRKGSVGRGDVFVVDEDTDLLDPIFQSGGVVNP
QWKPSRKGLKGSQKGKPDAPSKKVEENITTEKKTDSRTSVVFPLKPSDNIIDLDVGGSPK
KPPLGIPLLPKTPRVSTESNELIEEISSVSPATSQAPITVQTTKSPVHHKKHEGKEAEPE
RGSPQIVTIVPREGDLVLRSDGKTYRLRRGRPGRMGAPGPDGCLGDPGPPGVKGEKGKRG
IKGRAGRTGQPGSPGRPGLPTFYLWRNTAEEWAAFQQTNFYQLLSAGWPTEEGPAGPRGE
MGKPGIQGLPGEPGEEGQPGIPGEMGDPGPRGPPGRPGTPGRDGDDGADGQPGPPGPPGS
HGPWGHRGERGPQGEKGDEGLVGDRGPWGETGGPGQKGETGLPGPPGPIGPPGHQGLRGS
EGEEGPAGPDGESGPDGPSGPPGPPGAPGLTGPVGAQGANGSRGEMGPAGGVGPRGPQGP
PGPQGQIGPPGHRGPQGHPGLMGAAGPKGDPGPLGPVGRRGDPGVEGPMGFPGRPGHLGF
PGATGNRGADGDKGDAGAKGDKGDPGAAGIRGPQGERGPLGLPGFPGVSGPPGPAGTEGT
DGEGGLQGKQGSLGLKGNRGQDGRPGKPGPRGNKGLSGLRGHPGQPGPTGFSGQTGPQGA
EGKPGTQGLQGADGGAGFRGSRGFPGNAGERGANGPPGSPGPPGKSGPPGSPGPPGEKGF
TGKPGLEGPQGPVGMYGAVGAVGTRGPPGSLGGMGEAGIRGLPGPTGKPGPKGLPGSAGE
KGPRGSQGRPGDEGPKGILGPPGPPGPPGPSGGTGKPGPRGTIGPPGPQGPQGPAGIPGP
QGADGSVGPAGEKGHRGFPGLPGDPGPPGLSGPQGLPGLAGTEGPTGRKGDQGDLGSCGT
IGGPGPKGERGSEGVKGLQGPPGPAGREGEVGLPGEAGDPGPEGEKGGGGPPGLTGPEGP
WGSIGENGLQGPKGEKGNNGRTGEPGAAGGPGPGGPSGLQGIAGRPGRAGPDGPPGQKGE
PGPAGLSGPPGSDGPQGVIGPRGVRGDAGGFGPPGQTGQAGPKGDEGAKGEPGTLGVRGE
PGVPGPPGEQGEDGLPGIQGPSGLPGLEGPPGQMGAQGPPGLVGPSGINGKPGSEGKQGA
KGEKGDDGGIGPSGKTGPMGRRGKRGKAGVRGTRGERGLKGEAGEKGTTGLLGWPGRIGI
PGLPGDLGDQGGKGDEGEKGDMGIPGPPGPEGKKGSRGPVGLTGPAGQKGEQGNIGPPGP
RGALGMPGLPGWFGLKGLKGYQGQPGLPGRRGLPGPPGVPGPPGKSLNITFTQIKSLMYM
SDKPNFSLIQTLLDSLQQELRLLLDPPDGTKLRPATTCLELWLCHPDFSSGMYYIDPNQG
SSADALLAYCSFTSSSKQTCLHPEHSQLPMKAWMEESAEDGSFQWLSRLDQGHQFSYPGE
SVVQMRFLRLHSVSASQTVTYSCHPGSRLGPTDTEVKFLTDTRMQSYLGELNDCVPVEET
VSGSGESVLEFEDLQLLPLRDVAVMNSGNFTHQFSFTVGPVCFS
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctggactctctggactctctgtctgctcggctcggtgaccaggtgcgccgcc
tcacctgagctggactctggaggcgggtccggatccgggatgctgccgacagaagagctg
aatattctgcaggagctttctctccaggtgtcagatcgcagtaactcctccctgactgta
gagggcgccagctgtccggtaatcagagtcggacagtacgccaccttaacgctccccatg
caccagattttcagcgacaggttttcggatgagttcagtttgctggtgcagcttcgtagt
cggcagagggacgaacagagcgtgttcaccgtgctcagcccagacagccacatcacgctg
caggtccggatcagcgcctacgccatcattttcatcgggactcagcagcgccactacgag
ttccccatcagcggcctgtgcgatggagactggcatcgcgttgccttcagtgtctccagg
aatcggctgcagctgtttgtggattgctcgctgctggagagcgtggactgggtcaaccac
ggcctggacatcggttctgatggactcctcatggttggaggcatcctggagagttttgaa
actccgtttgaaggggagctgcatcagctgtccttcctcttggatgaccctgatggcgcc
cagcagcactgcagccaccacccgccccgctgcagccgctccgctcccaaaccgcctcgc
tccccgcgcaccaacgtcctggagaatgaatctcagcgacaagagttgtctcgtggcgat
gggacgataccttccaggccgaaccgaaagggctcagtgggacgtggagacgttttcgtg
gttgatgaggacactgacttgctagatcccatctttcaaagcggtggagtcgtgaaccct
cagtggaaaccttctagaaaaggactgaagggaagccagaagggcaaaccggacgcgccg
tctaaaaaagtggaggagaacattacaacagagaaaaagacagactctaggacttcagtg
gtgtttcctctaaaaccctcggataatataatcgacttggatgtcggaggttccccaaag
aagcccccgctgggaattcctctgcttcccaagactcctagagtttcaactgaatcaaat
gaactaatagaggagatcagctctgtttcacctgcaacgagtcaggccccgatcactgtc
cagaccaccaagtcaccggtgcatcataaaaagcatgaagggaaagaagcagaaccagag
agaggaagccctcagattgtgaccattgtgcccagagaaggagatctggtcctgcgatct
gacgggaaaacgtacaggctccggagaggacgacccggcaggatgggagcccccggacca
gatggatgcctgggtgatcctggtcctcctggggtcaaaggtgaaaagggtaaaagaggc
attaaaggcagagctggtagaacgggccagccggggtcgccgggacgtccgggtttaccg
acattttatctgtggaggaacacagctgaggaatgggctgcgtttcagcaaactaatttc
taccagctactgtcggctggttggcctactgaggaaggacctgcaggacctcgtggagag
atgggaaaacccggcatacaggggctgccgggtgaacctggagaggagggacaaccaggg
atcccaggagaaatgggggacccaggccccagagggccccccgggcggcccgggacccca
ggcagagatggggacgatggggcagacggtcagccggggcctcctggacctcctggatca
catgggccgtggggccacagaggagagcgaggaccacagggagagaaaggtgatgagggt
ctggttggcgaccgcgggccctggggggaaactggtgggcctgggcagaagggtgagact
gggctgcctggtccccctggtccgattggacctccaggacaccaggggctccgaggttca
gagggggaagaaggacccgctggacctgacggggagagcggaccggacggcccctcgggc
cccccagggccacctggagcgccgggtttgactggaccagttggtgcgcagggagctaac
ggctcgaggggcgaaatgggcccagctggtggcgttggccctcggggtcctcaggggcct
ccgggtccgcagggccagatcggacctccaggacacagaggccctcagggtcatccagga
ctgatgggcgctgctgggcctaaaggagatcctgggcctctggggccggtgggccgtcgg
ggggatcctggcgttgagggccctatggggtttccaggcaggccgggtcatctgggtttc
ccaggagccacggggaacagaggagccgacggagacaaaggagacgcaggagctaaaggc
gacaaaggagatccaggggccgcaggcatccggggccctcagggggagcggggccccctc
ggtctgcccggcttccccggggtcagcggcccgccgggccctgcaggtactgaggggacg
gacggtgagggcggcctgcaggggaagcagggcagcctggggttaaaggggaacagagga
caagatggccgacctggcaaacccggaccaagaggcaacaagggtttgagtggactgagg
ggccatcctggccaaccgggcccaacgggtttctctgggcaaacgggaccgcagggagca
gaaggaaagcctggtacacagggtttgcagggcgccgacggcggcgctggcttcagaggc
tccaggggttttccaggaaatgctggtgagagaggagcaaacgggccgcccgggtcaccg
gggccaccaggaaagtcggggcccccaggatctccgggtccaccaggagaaaaaggtttc
acagggaaaccgggcctggaaggacctcagggcccagttggcatgtatggtgcagtcggg
gccgtggggacgcgagggcctccaggatcactgggaggaatgggagaggcgggaataaga
ggattaccgggcccaactgggaagccgggtcccaaaggtctgccaggttctgctggagag
aaaggacctcgcggatctcagggccgacctggagatgaaggacccaaaggaatcctggga
ccgcctggccctcctggtcctcctggtcccagcggtgggacgggcaaacctggacccaga
ggaaccatcgggcccccggggcctcaggggccgcaggggccagcaggaatcccaggccca
caaggcgctgatggctcagtgggaccagcaggagaaaaaggacacaggggtttccccgga
ctgccaggcgacccaggacccccaggactcagcggaccacagggtcttcctggacttgca
ggaaccgagggtccaactggaaggaaaggagatcagggggatctgggttcgtgtgggacg
attggaggtccaggacccaaaggggaacgaggatccgagggggtcaaaggtctccagggt
cccccgggaccagccggcagagagggggaagtcgggcttccaggtgaagccggagaccct
ggacccgaaggagagaagggcggtggggggccccccggtctgaccggcccagagggcccc
tgggggtccatcggggaaaacgggctccaggggccaaagggagaaaagggaaacaacggg
agaacgggtgagcccggagcggccggcggtccgggtcctggaggtccgtcagggctgcag
gggatcgcgggtcgtccaggacgagcaggaccagatggaccgccgggacagaagggggaa
ccgggaccagccggactctctggacctccaggatcagacggtcctcagggggtcatcgga
cccagaggggtcagaggagacgccgggggcttcgggccgcctggtcaaactggtcaagct
ggaccaaagggggacgaaggagccaaaggtgaacccgggacgttaggggtcagaggtgaa
ccaggagtaccaggcccaccaggagaacagggtgaagatggacttcctggaatccaaggt
ccttcaggtctaccagggttggagggacccccgggacagatgggagctcagggtcctccc
ggccttgtagggccttctgggataaatggaaaacctggatctgaagggaaacaaggcgcc
aaaggagagaagggagacgatggtggaattggaccttcagggaaaacgggtcccatggga
aggagggggaaacgggggaaggctggagtcagagggaccagaggagagcgaggactaaag
ggtgaagcaggagaaaaggggacgacaggcctgcttggctggccaggaaggattggaatt
cctgggctacctggagatctgggggatcaaggtggaaaaggagacgagggtgagaaagga
gacatgggaatacctggaccacctggacctgagggcaaaaagggaagtcgaggtccagtc
ggtctgactggtccagccggccagaaaggagaacagggaaacatcggtccgcccgggccc
agaggagcgctgggaatgcccggcttacctggatggtttggattaaaggggttgaaaggt
taccaaggtcaacctggacttcctggaaggaggggcctcccaggcccacctggagtcccc
ggccccccaggaaagtcactgaacatcactttcactcagataaagagcctgatgtacatg
tcggacaagccaaacttctccctgatccagacgctgctggactccctgcagcaggagctg
cggctgctgctggaccctcctgacgggaccaagctgcgcccggccaccacctgcctggag
ctctggctctgtcaccccgacttcagcagcggaatgtattacatcgaccccaaccagggc
agctccgccgacgctctgctggcttactgcagcttcacctcctcatcaaaacagacctgc
cttcaccccgaacactcccagctgccgatgaaagcttggatggaggaatcagctgaggat
ggatcgtttcagtggctcagcaggttggatcagggtcatcagttttcttatccaggtgag
agtgtggtgcagatgcgttttctgcggctgcacagcgtctctgcgtctcagacggtgacc
tactcctgtcatccaggaagccgtctgggtccgaccgacacagaggtgaaattcctcacc
gataccaggatgcaaagctacctcggagagctgaatgactgtgtgcctgtggaggagacg
gtttccggttctggagagtctgtgttggagttcgaggacctgcagctgcttcctctcaga
gacgtggcggtgatgaacagcggaaacttcacgcaccagttcagcttcaccgtcggaccc
gtgtgtttcagctag
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