Poeciliopsis prolifica (blackstripe livebearer): 129367006
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Entry
129367006 CDS
T09758
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129367006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129367006
03009 Ribosome biogenesis [BR:
pprl03009
]
129367006
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129367006
Spliceosome [BR:
pprl03041
]
Complex A
U2 snRNP components
U2 related factors
129367006
Complex B
129367006
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
129367006
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
90S particles
Helicases
129367006
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
SRP54
AAA_25
Apis_Csd
nSTAND3
AAA_29
Atrophin-1
AAA_7
RSB_motif
Motif
Other DBs
NCBI-GeneID:
129367006
NCBI-ProteinID:
XP_054897162
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDSKLLAAP
SNSMPSMSSIPPIKQMNMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFTDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRALPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRQDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYDMSNFPQCEAKRQLERIIAKLESKEYTQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacaccgtttggatttgggcgatgattactcctccagtaagaagcggtct
gacgggagagacagagaccgcgacagagaccgtgaggaccgttccagggacagggatcga
gacagagatcgcgacagggacagagaccgggacagggactccaagctgttggcagctccc
tctaacagcatgccgtcgatgtcgagcatacctcctatcaagcagatgaacatgcaccag
cagattaacccattcaccaatctgccacacacgccgcgctactacgaaatcctgaagaaa
aggctacagcttccggtgtgggagtacaaagaaagcttcaccgacatcattacacgccat
cagagctttgtccttgttggagagactggctctggaaaaacaacacagattcctcagtgg
tgtgttgacatggtgagggccttgcctggtccgaagcgggccgtagcttgtactcagccg
aggagagtggctgccatgagtgtggctcaaagggttgcagacgaaatggatgtcatgctt
ggtcaggaagtcggctactccatcagatttgaggactgcagctctgccaagactatatta
aaatacatgacagatggtatgttactgagagaggctatgaatgatcctctgctggagcga
tatggtgtgatcattctggatgaggcccacgagcgaactctggccacagacatcctaatg
ggcgtgttaaaggaagtggttcgccaaagacaggatctgaaggtaattgtgatgagtgca
accctggatgcaggaaagttccaagtgtacttcgacagttgccctctgctcaccattcct
ggacgcacacatccagtagagatcttctacacccctgaaccggagcgggactacctggag
gcagctattcgtaccgtcattcagattcacatgtgtgaagaggatgaaggtgacgtcctt
ctgttcctcacaggtcaagaggaaattgatgaagcctgtaagagaatcaagcgagaagtt
gacgaccttggccctgaagtcggagacatcaaaatcattccactgtattccacgttgccc
ccgcagcagcagcagaggatctttgagccacctcctccaagaaagccaaatggcgctata
gggagaaaggttgttgtgtcaacaaatatcgctgagacgtcgctaacaattgatggtgtc
gtgtttgtcattgaccccggatttgccaaacagaaggtgtacaatccccgcatcagagtt
gagtctctgttagtcacagccatcagtaaagcttcagcacagcagagggcaggaagagca
ggcagaacacgtccagggaaatgttttcgcctctatacagagaaggcctacaaaacagag
atgcaggataatacatacccagagattcttcggtccaatttgggatctgttgtgctgcag
ttgaagaagttgggcattgatgaccttgtccactttgacttcatggaccctccagctcct
gaaacgctaatgagagctcttgagctgctcaattatctggctgctctcaacgatgatggt
gacctgactgaacttggctccatgatggcagaattcccgctggatcctcagctggccaag
atggtcatagcaagctgcgagtttaactgctccaatgagatcctctccattactgccatg
ctgtcagtcccacagtgttttgtccgtcccacggaggctaagaaggcagcagacgagtcc
aagatgagatttgctcacattgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccatgaagctaatcagtggtgttatgacaactttgtcaactaccgctcg
ctgatgtctgctgacaacgtacgtcagcagctgtccaggatcatggaccgcttcagtctg
cctcggcggagcacagagtttaccagcagagattattacatcaatatccgacgagcgctc
tgcactggcttcttcatgcaggttgctcatttggagcgcacaggccattacctcacagtg
aaagacaaccaggtggtccagctgcacccatccacagtcctggaccacaaacctgagtgg
gtgctctacaatgaatttgttctcaccaccaagaactacatccgcacttgcacagacatc
aaaccagagtggttggtgaagattgcaccgcagtactatgacatgagtaactttccacaa
tgtgaagctaaaagacagctggagcgaattattgccaaactagagagcaaagagtacaca
cagtactga
DBGET
integrated database retrieval system
