Poeciliopsis prolifica (blackstripe livebearer): 129367616
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Entry
129367616 CDS
T09758
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03015
mRNA surveillance pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129367616
09123 Folding, sorting and degradation
03018 RNA degradation
129367616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129367616
03041 Spliceosome [BR:
pprl03041
]
129367616
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129367616
mRNA cycle factors
Stress granule specific factors
129367616
Spliceosome [BR:
pprl03041
]
Complex C
Other components
Complex C specific factors
129367616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
HTH_58
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
129367616
NCBI-ProteinID:
XP_054898148
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPGPRWAAQGVRPQHFQNMPNAMRPSAPRPQTFNAIRTTTTTNTQVPRM
MASQRMPTQALGQRPASASATAAPVRAMPGYKYAAGVRNPQQHIASQPQVAMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcctagctaccccatggcctcgctctacgtaggagaccttcaccca
gatgttaccgaggccatgctctacgagaaattcagtccggccggaccaatcctgtccatc
agagtgtgcagagacatgatcacccgccgttcgctgggatatgcgtatgttaacttccaa
caaccagctgatgctgaaagggctttggacacgatgaacttcgatgtgattaagggcagg
cctctccgcatcatgtggtcccagcgtgacccctccttgaggaagagcggggtgggaaac
atcttcatcaaaaacctcgacaagtccattgacaacaaggccctttatgacaccttctct
gcgtttggaaacatcctctcttgcaaggtggtttgtgatgaaaatggctcaaaaggttac
ggttttgtgcactttgagacccacgaagcagctgagcgtgccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtttttgtcggccgcttcaaatctcgcaaagagagggag
gctgagcttggggcacgtgccagagagtttaccaacgtttacatcaaaaactttggggag
gacatggatgatgagaaactgaaggagttatttagcaaatatggtcctgcgctcagcatc
cgggttatgacagacgagagtggcaagtccaaaggattcggcttcgtcagctttgagaga
cacgaagatgctcagaaggccgtggatgacatgaacggcaaagaactgaatggccgacaa
gtgtatgtgggccgtgcgcagaagaagggcgagcgccagaatgaacttaaacgcaaattt
gaacagatgaagcaagatcgcatgaccagataccagggtgtcaacctgtacgtcaaaaac
ctcgacgacggtctcgacgacgagcgtctgcgcaaggagttctccccattcgggacaatc
accagtgcgaaggtgatgatggagggcggccgcagcaaaggtttcggcttcgtgtgcttc
tcatcgccggaagaggccactaaagctgtgacggagatgaatgggcgcatcgtggccacg
aagcctctgtatgtggcgctggctcagcggaaggaagagcgccaggcccacctgaccaac
cagtacatgcagaggatggccacggtccgggccgtgcccaaccctgtcctcaacccctac
cagcctgctccaccctcaggctacttcatggcagctattccacaggctcagaaccgcgct
gcatattactctgccaaccagttggcccagctccgccccggtcctcgctgggccgctcag
ggcgtgcgacctcagcatttccaaaacatgcccaacgccatgcgtccatcagcaccaagg
ccccagaccttcaacgccattcgtactaccactaccactaacacccaggtcccgcgcatg
atggcctcccagcgcatgcccacccaggccctcggtcagcgccctgccagtgcttcagcc
actgcagccccagtccgtgccatgcctgggtacaaatatgctgctggtgtgcgcaaccct
cagcaacacatcgcgtcccagccacaagttgccatgcagcaacctgctgtccatgtccaa
ggtcaggagcccctgactgcttccatgctggctgctgcccctcctcaggagcagaagcag
atgctgggtgagcgtctgttccccctgatccagaatatgcatcccagcctggctggtaag
atcaccggtatgcttctggagatagacaactctgagctgcttcacatgcttgagtcacct
gaatctctgcgctccaaggtggatgaggctgttgctgtgctccaggcccaccaggccaaa
gaggctgcgcagaaatccaccacacctgccggtgttcccagcgtctaa
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