Poeciliopsis prolifica (blackstripe livebearer): 129367965
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Entry
129367965 CDS
T09758
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
KO
K06236
collagen type I alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04518
Integrin signaling
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129367965 (col1a1b)
04518 Integrin signaling
129367965 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129367965 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129367965 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129367965 (col1a1b)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129367965 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
129367965
NCBI-ProteinID:
XP_054898665
LinkDB
All DBs
Position
Unknown
AA seq
1446 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDKQFGSCTSEGQSYNDKDVWKPEPCQICVCDMGT
ILCDEVICEDTSDCEDPYIPDGECCPVCPDEGPTTEATIPKGPTGPRGDPGLPGLPGNDG
IPGQPGLPGPPGPPGPPGLGGNFSPQMSYFDPSKSSGPPVPGPVGPPGPRGAPGLPGPPG
PSGSPGPQGEPGEPGAVGPMGPRGAAGPPGKNGDDGEAGKAGRPGERGPAGPQGARGFPG
TPGLPGIKGHRGFPGLDGAKGDSGPAGPKGEPGVPGENGIPGAMGARGLPGERGRPGPAG
PAGARGNDGNTGPAGPPGPTGPAGPPGFPGAVGAKGETGPAGGRGSEGPQGARGEPGNPG
PAGPAGPAGSAGSDGQPGAKGANGAPGIAGAPGFPGNRGPAGAQGGAGAPGPKGNNGEPG
PPGPKGEAGAKGEPGPAGLQGLPGPSGEEGKRGARGEPGGAGPRGPPGERGAPGARGFPG
SDGAAGGKGAPGERGAPGAMGSQGATGEGGSPGAPGAPGSKGVTGSPGSPGPDGKVGPAG
APGQDGRPGPPGPTGSRGQPGVMGFPGPKGAAGESGKPGERGPGGAAGPVGAPGKDGDVG
APGPSGPGGPPGEKGEQGPSGAPGFQGLPGPQGATGESGKPGEQGVPGEAGPPGPAGPRG
DRGFPGERGGPGPAGPTGPRGAPGAGGNDGPKGEAGAAGAPGSAGLPGMQGMPGERGSSG
MPGPKGERGDAGAKGSDGAAGKDGVRGLTGAIGLPGPPGAQGEKGEPGPTGIVGPSGPRG
SPGERGETGPAGPAGFAGPPGADGQPGAKGETGDTGPKGDAGPAGPPGPVGSAGPQGPTG
ATGPKGARGGAGPPGATGFPGPAGRVGPPGPSGAAGPPGPVGPVGKDGPRGSRGETGPAG
RPGESGAAGAPGPSGEKGSPGSDGSPGAPGLPGPQGIAGVRGIVGLSGQRGERGSPGIPG
PSGEPGKQGPSGLVGERGPPGPAGPPGLSGAPGEAGREGSPGHDGAPGRDGPPGPKGDRG
ESGMAGPPGPPGAPGAPGGVGPSGKTGERGESGPAGPAGPSGIAGPRGSAGPAGAKGDRG
EAGEAGERGHKGHRGLSGQPGLPGPPGVHGDRGPAGASGPAGPRGPSGNNGSPGKDGQNG
MPGPIGPPGPRGRNGEMGPSGPPGPPGPPGPPGAPGSAFEFVAPPQQEKGPDPLRGGYRA
DDPNMMRDRDMEVDTTLKTLTQKVENIRSPDGSQKSPARMCRDLRMCHPEWKSGTYWVDP
NQGSSLDAIQVHCNMETGETCVYPIDSTIPMKNWYLSKNLREKKHIWFSESMTGGFQFQY
GTEGADPEDVNIQISFMRLMSNQASQNVTYHCKNSIAYMDSATGNLKKAVLLQGSNDVEI
RAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVEV
GPVCFL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagtgctgttggcg
agaggtcaaggcgaggatgataagcaatttggcagctgcacatcagaaggacagtcgtac
aacgacaaggatgtatggaaaccagaaccctgccagatctgcgtgtgcgacatggggacc
atcctctgcgatgaggtgatctgcgaggacacatccgattgtgaagacccctacattcct
gacggagagtgctgccctgtctgccccgatgagggtcctaccactgaagctacgattcca
aagggacccactggccccagaggagatccgggtcttcctggtctccctggcaatgatggg
atccctggacagcctggccttcccggcccacccggcccccctgggccccctggccttggt
ggaaacttctctcctcaaatgagctacttcgacccctccaagtccagcggcccacccgtc
cccggcccagttggtcctcctggtccccgtggtgctcctggtcttcccggcccacctggt
ccttcaggtagccctggaccccaaggagagcctggtgagcccggtgctgtgggtccaatg
ggtccccgcggtgccgcaggccctcccggaaagaacggagatgatggtgaggctggtaaa
gctggacgccccggtgagcgcggacctgctggccctcagggtgctcgtggattccctgga
acccccggactgcctggcatcaagggacacagaggtttccccggtcttgatggagccaag
ggagacagtggacctgctggtcctaagggagagcctggtgtccccggagagaacggcatc
ccaggcgccatgggtgcccgtggtcttcctggtgagagaggccgccccggacctgctggc
cctgctggtgctcgtggtaacgatggcaacaccggtcctgctggtcctcccggacccacc
gggcctgccggaccccctggattccctggcgctgttggtgctaagggtgagaccggtcct
gccggaggacgtggatctgagggaccccagggagcccgtggtgagcctggtaacccagga
cctgctggacccgctggacctgctggttctgctggatctgatggtcagcctggtgctaaa
ggtgctaatggcgctcctggtatcgctggtgctcctggattccctggtaaccgtggtcct
gctggagctcaaggaggcgctggtgctcccggtcccaagggtaacaatggcgagcctggt
cctccaggtcctaagggagaggctggtgccaagggtgagcctggcccagctggacttcag
ggacttcccggcccctctggtgaggagggaaagagaggagctcgtggagagcctggtggt
gctggaccccgtggacctcctggagagcgtggcgcccctggtgctcgtggtttccctggt
tctgatggagctgctggtggaaagggcgccccaggtgagcgcggtgcccccggagcaatg
ggatctcagggagccaccggtgagggcggaagccccggcgctcctggtgctccaggatca
aagggtgtgaccgggagccccggaagccccggccctgacggcaaagttggacctgctggt
gctcctggtcaagatggccgccccggacctcctggccccactggatccagaggacagccc
ggagtcatgggattccccggacccaagggagccgctggcgaatctggtaaacctggtgag
agaggacctggtggagctgctggcccagttggtgctcccggcaaagatggtgatgttgga
gctcccggaccttctggacctgggggacctcctggagagaaaggagagcagggaccttct
ggtgcaccaggattccaaggtcttcccggaccccaaggtgctactggtgagagtggcaag
cctggtgagcagggcgttcctggagaggccggaccacctggcccagctggacccagaggt
gacagaggcttccctggagagcgtggtggtcccgggcctgccggtccaactggaccccgt
ggcgcccctggtgctggtggaaacgatggacctaagggagaggctggagctgctggcgcc
cccggtagtgcgggactccctggtatgcaggggatgcctggtgagcgaggatcttctggc
atgcctggacccaagggagagagaggagacgctggtgctaaaggttctgatggcgccgct
ggcaaagatggcgtgcgcggtctgactggtgctattggacttcctggacctcctggtgct
cagggtgagaagggagagcctggtcccactggaatcgttggaccctctggtccccgtggt
tcccctggtgagcgtggagagactggacctgctggacctgctggattcgctggacctcct
ggtgctgatggtcagcctggtgccaagggagagactggtgacaccggaccaaagggagac
gccggtcctgctggaccccctggacctgtcggatctgccggtcctcagggacctactggt
gctactggacccaaaggtgctcgtggtggtgctggacctcctggtgctactggtttccct
ggacctgccggcagagttggaccccctggcccctctggagctgctggaccccccggaccc
gttggacctgttggaaaggacggacccagaggatctcgcggtgagaccggccctgctggt
cgccctggtgagtctggtgctgccggtgctcccggtcccagtggagaaaagggatcccct
ggctctgatggatctcctggtgcccccggtctgcctggaccccagggtattgccggagtg
agaggtatcgtaggtctcagtggacagcgtggagagcgtggttcccctggtatccctgga
ccctctggtgagcctggtaagcagggaccttctggccttgttggtgagcgtggaccccct
ggacctgctggaccccctggactgtctggtgcccccggagaggctggtcgtgagggatct
cctggtcatgatggtgctcctggtcgtgatggtcctcctggccccaagggagaccgtggt
gagagtggcatggctggaccccctggacctcctggtgctccaggagcccccggaggtgtc
ggcccctctggcaaaaccggtgaacgcggagagagtggtcctgctggtcctgctggtcct
tctggcattgctggaccccgtggttctgctggccctgctggtgctaagggagacagagga
gaggctggtgaggctggagagagaggccacaagggacacagaggactcagcggacagcct
ggtctgcctggacctcctggtgttcatggagacagaggacccgctggcgcttccggaccc
gctggacccagaggaccttctggaaacaatggttcccccggtaaggatggtcagaatggt
atgcccggacccatcggaccccctggacctcgtggtcgcaatggagagatgggaccttct
ggtcctcctggacctcctggaccccctggacctcctggagcccctggcagtgcctttgaa
ttcgttgcaccaccccagcaggagaagggtccagatcctctccgtggtggctaccgcgct
gatgaccccaacatgatgcgtgaccgtgacatggaggttgacaccaccctgaagaccctg
acccagaaggtcgagaatatccgcagccccgacggctcccagaagagccctgctcgtatg
tgccgtgacctgaggatgtgccaccctgaatggaagagcggcacatactgggttgacccc
aaccagggctcctctctggacgccatccaggtccactgcaacatggagactggagagacc
tgcgtctaccccatcgattccaccatccccatgaagaactggtacctcagcaagaacctc
agagagaagaagcacatctggttcagcgagtccatgaccggtggattccagttccagtat
ggcaccgagggagctgatcccgaggacgtcaacatccagatctccttcatgcgcctgatg
tccaaccaggcctcacagaacgtgacatatcactgcaagaacagcatcgcctacatggat
tctgcaacaggcaacctgaagaaggccgtccttctccagggctccaacgatgtcgagatc
agagccgaaggcaacagccgcttcacatacagcgtcagcgaggatggctgcacgtcacac
actggcacatggggcaagacagtcattgactacaagacatcgaaaacatcccgactgccc
atcattgacattgctcctatggatgttggtgcacccgatcaggaatttggcgttgaagtt
ggccctgtttgcttcttgtaa
DBGET
integrated database retrieval system
