Poeciliopsis prolifica (blackstripe livebearer): 129367979
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Entry
129367979 CDS
T09758
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129367979 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129367979 (msh2)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129367979 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
129367979
NCBI-ProteinID:
XP_054898688
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MAVQPKQNQNPSLDGAAEHGFLNFIFSMPEKPDTTFRMFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGSRKLESVILSKMNFEAFVKDLLLVKQYRVEVYRNHSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGTGGEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSAEGNKLREVVQRGGVLVSDRKRAEFSSKDIVQ
DLNRLLRSKKGETVASNTLPELDQQVAMSCLAAVVRFLELLSDESNFNSFSLTTLGLGQY
MRLDNAAVRALNLFQGSPDDTNGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPALLT
ALESYSGSYQVLLHAVFTSPLTDLQTDFIKYQEMIETTLDMNQIEHHEFLVKASFDPVLS
ELREKMDALEKSMQAVLSSAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKNLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAVASFAVASVSAPVPYVRPRLLDDGRRRLELLQARHPCMETDADTAFIPNDISFVQ
GQKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHISSKISCFCL
FATHFHELTALAAQQPAVHNLHVTALTTHNTLTMLYRVKPGVCDQSFGIHVAELACFPPS
VLAAAREKAEELEEFQEPAGDDSKRDEEPEVKRRRTDKQVGENLIQDFLEKVKALPVATM
TEEEVKAELRRIKQDLVAKNNMYISEILARCAPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaaccagaacccgtccctggacggcgcggccgaacacggc
tttctgaacttcatcttctccatgccggagaaaccagacacaaccttcaggatgtttgac
cggaacgactactacaccgtccacgggaaagacgccatatttgctgccaaggaggttttt
aagaccaacggagttatcaaatatctgggctcagggagccgtaagctggagagcgtgatc
ctgagcaagatgaacttcgaggcctttgtgaaggatctgctgctggtgaagcagtaccga
gtggaggtgtacaggaaccacagcaagagcagcaaggagcacgactggaggatcgagtac
aaggcctctccaggaaacctgacccagttcgaggacattctgtttggcggaggaaccgga
ggcgagggatgcgcgggagtggtcgccgtgcggtttgcgacgggagccgacggacagcga
gtggttggggtcggctatgtggacgcagcccagaggaccatgggggtgtgtgagtttccg
gacaacgagatcttctccaacctagagtctctactcgtccagatcagccccaaagagtgt
ctcctggctcagggagaatgcagcgctgaggggaacaagctccgggaggtggtgcaacgt
ggcggcgttctggtctccgacaggaagagagcagagttcagcagcaaggacatcgtccag
gatctcaacaggctactgcgatctaagaaaggagagacagtggcgagcaacacgctgcct
gaactggaccagcaggtggccatgtcatgtttggctgctgtggttcgattcctcgagctt
ctctccgatgagtccaacttcaactcttttagcctcacaacgctgggactggggcagtac
atgaggctggacaacgccgctgtcagggctctcaacctcttccagggttcgcccgatgac
accaatggagctcattcattggccggtttgttgaacaagtgccgcactccgcagggtcag
cggctggtcaaccagtggatcaaacagccacttatggacaaaaccaaaatagaggaaaga
ctggaccttgtggagagttttgtgtgcgactcagagctgaggcagacttgtcaggaggat
ctgctgcgacgctttccagatctccaccgcctggccaaaaagtttcaccgtcacacggcg
acgctgcaggactgttaccgcgtctaccaggccgtgagtcacatccccgctctcctcacg
gctctggagagctactcaggcagctaccaggtgttgcttcacgcggtgttcacctcgcct
ctcactgacctgcagacggatttcatcaagtaccaggagatgattgaaaccaccctggac
atgaatcagatcgaacaccacgagttcctggtgaaggcgtcgttcgatcccgttctgagt
gagctcagggagaagatggacgccctggagaaaagcatgcaggctgtgctgagcagtgca
gccagagaacttggcctggaagccggtaagacggtgaagctggagtccaacgccgtgctg
ggcttctatctgagggtcacatgcaaggaggagaagaatctgaggaacaacaagaagttc
accacgctggatgttcagaagaacggcgttcgcttcacaaacagcaagctgagctctctg
aatgaggagtacaccaggagcagggaggagtacgaggaggcccagaacgccatcgtcaaa
gagatcatcaacatcgcctcaggttacgtggatccccttcagacgctgagtgacgtcatc
gcgcagctcgacgcggtggcaagcttcgccgtggcgtcggtgtctgctccggttccgtac
gtccggccccgactgctggacgacggccgcaggcgtctggagctgctgcaggccagacat
ccctgcatggagacggacgcggacaccgccttcatacccaacgacatcagcttcgtccag
gggcagaagagcttctatattataacaggaccgaacatgggagggaagtccacgtttatc
cgccaggtgggtctgatcgcgctgatggctcagatcggctgcttcgtgccgtgcgagaag
gcggagctcagcgtgatcgacagcgttctggcccgagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgagtgagatgttggaaactgccgccatccttcgctctgcc
acggaaaactccctcatcatcatcgacgagctcggcaggggaacctctacgtacgacggc
ttcgggctggcctgggccatcagtgaacacatctcctccaaaatcagctgcttctgcctc
ttcgccactcacttccacgagctgaccgccttggcggcacagcagccggctgtccacaac
ctgcacgtcaccgccctgacgacccacaacacgctcacaatgctgtaccgagtcaaacca
ggtgtgtgtgaccagagctttgggatccacgtcgctgagctggcctgcttccccccgtcg
gtgctggccgcggcgagggagaaggcggaggagctggaggagttccaggaacctgcgggg
gacgattcgaagcgggacgaagagcccgaggtcaagagacggcggacagataagcaggtg
ggagaaaacctgatccaggacttcctggagaaggtaaaggcacttcctgtcgccaccatg
actgaggaggaggtgaaggcagagctcaggagaataaagcaggacttggtggccaaaaat
aacatgtacatcagtgagatacttgcccgctgcgctccagtaaaaactgcctga
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