Poeciliopsis prolifica (blackstripe livebearer): 129369235
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Entry
129369235 CDS
T09758
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129369235 (ddx1)
03016 Transfer RNA biogenesis [BR:
pprl03016
]
129369235 (ddx1)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129369235 (ddx1)
Spliceosome [BR:
pprl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129369235 (ddx1)
Transfer RNA biogenesis [BR:
pprl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129369235 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
129369235
NCBI-ProteinID:
XP_054900605
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAIFNTWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGSAFDFPQNLSSQGFFASCVLKNAELKF
NFGGEDFKHPPKSGFVALDQAPESHTIKSSQTGSAKVTQVKASSNAPKALIIEPSKELAE
QTFNNVKQFKKYVENPKLRELLVIGGVAAKEQLAVLEQGVDIVVGTPGRLDDLVSTGKLN
LSHVRFLVLDECDGLLTAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADRQWERLGKNHIRTDEVHAKDNTRPGVN
TPEMWSEAIKMLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQL
SCVCLHGDRKPNERKNNLDRFKRKDVKLLICTDVAARGIDISGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCQNRGRGCYNTRLKDEGGCTIWYNEKELLS
EIEEHLKCTITQCDTDIKVPVDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELAVLER
EAQTSFLHLGYMPDQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagccttttctgaaatgggtgttatgcctgaaatcgcgcaggctgtggaggagatg
gattggctactgccaacagatatccaagcagagtccattcccttgattcttggaggagga
gatgttcttatggcagcagaaactggtagtggaaagacaggagccttcagtatcccggtc
atccagattgtctacgaaaccttgaaggatcagcaggagggcaagaagggcagagctgct
gtcaaaactgggggagcaattttcaacacctggcagatgaatccatatgatcgtagccca
gcctttgcaattggcccagatggactctgctgccagagcagggagttcaaagagtggcat
ggctgccgctccaccaaaggtgtcacaaaagggaagtactactatgaggtaacctgccac
gaccagggtctctgccgggtgggttggtctaccagtcaagctgctctggatttgggaact
gacaagtatggctttggttttggtgggaccggaaagaaatccaacaacaagcaatttgac
agctacggggaggagtttaccatgcatgacactatcgggtgctacctggatttagataag
gggcagatctccttctctaaaaatggaaatgacctgggatcggcttttgacttccctcaa
aatttaagcagtcagggcttttttgcttcatgcgtcctaaagaatgctgagctgaagttc
aactttggaggagaagacttcaaacatccccctaaaagtgggtttgtcgctctggatcag
gcaccggagagtcacaccattaaatcctcccaaacaggcagtgccaaagtgactcaagtg
aaggcttcatcaaatgcacccaaagccctgatcattgagccatccaaggagctggcagag
caaactttcaacaatgtcaagcagtttaagaaatacgtggaaaatcccaagctaagggag
cttcttgtgatcgggggtgttgcagctaaagagcagttagcagttctggaacagggggta
gacatagtggtgggaacacctggaagactggatgaccttgtttccactggaaaactcaat
ctgtcccatgtccgtttcctggttctggatgagtgtgatggtctcctaacagccggatat
acagacttcatcaataggatccataaacaaatccctcaggtgacctctgatggcaagaga
ctgcaggtcattgtgtgctccgccacactgcattccttcgacgtgaagaagctttctgaa
cgcatcatgcattttcccacttgggtggaccttaaaggtgaggactctgtcccggaaacc
gtccaccatgtggtggtgccggtcaacccaaaggccgaccgacagtgggagcgcctcggc
aagaaccacatccggactgatgaagttcatgccaaagataacacccgaccaggagtcaat
acgccagaaatgtggtcagaagctatcaagatgctgaagggagagtacacggtcagggcc
atcaaagagcacaaaatggaccaggccataatcttttgtcgcaccaagatcgactgcgac
aacatggagcaatacttcattcagcaaggaggaggtccagacagcaaaggtcatcagctc
tcctgcgtttgccttcatggtgatcgaaagccaaatgagaggaaaaataacctggatcgt
ttcaagagaaaagatgtgaagctgctgatctgcacagatgtggccgccagaggaatcgac
atcagcggcgttccttacgtgattaatgtcaccctgcctgatgagaagcagaactatgtc
catcgtatcggcagagttggtagagcagagagaatgggacttgccatctccctagttgct
atggaaaaagaaaaggtgtggtaccatgtttgtcagaaccgggggagaggctgctacaac
acccgactgaaggatgaaggagggtgcaccatatggtacaacgagaaagagcttctgtct
gaaatcgaggagcatctgaaatgcaccatcactcagtgtgacacagatattaaagtacct
gtagatgagtttgatggaaaagtgacttatggacagcgcagagctctgggaggcggaaac
tataagggtcatgtggatgttctggccccgacagtccaggagttggccgtccttgagaga
gaagctcaaacatcttttcttcatttaggatacatgccagaccagttgttcagagccttc
taa
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