KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129370320
Entry
129370320         CDS       T09758                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
  KO
K19719  collagen type II alpha
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04510  Focal adhesion
pprl04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129370320 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129370320 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pprl00536]
    129370320 (col2a1a)
Glycosaminoglycan binding proteins [BR:pprl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129370320 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 129370320
NCBI-ProteinID: XP_054902204
LinkDB
Position
Unknown
AA seq 1490 aa
MFSFLDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVIG
PRGPPGPMGPLGEQGTRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMSAGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAG
PIGPRGPPGPSGKPGSDGDPGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEAGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAG
PQGAPGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRPGLKGLPGKDGETGPSGPPGPSGPAGERGEQG
QPGPPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGSDGPKGAIGPAGAVGSQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEG
APGKDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGEVGPPGPAGFAG
PPGADGQPGAKGELGEPGQKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRTGDAGLRGAAGAPGEKG
EPGPMGPPGSDGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRG
PPGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGSAGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGAQGPAGPPGLSGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGPAGDAGSAGPAGPSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDISAFAGMGQTEKSPDPLRYMRADEASSSLRQHDIEVDS
TIKSLNTQIENLRSPDGTQKNPARSCNDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNM
ETGETCVYPSITKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQDGPAASAANVQLTF
LRLLSTEASQNFTYHCKNSIAYMDQATGNLKKSLLLQGSNDVEIRAEGNSRFTYSVLEDG
CKSHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgttcagctttttggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcaggaagaagatgaccaggaggcaggtggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgtcgcatctgtgtgtgt
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgcgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgctaagggccagaagggagaaccaggagagattgcagatgtcatagga
ccaagaggaccaccaggccccatgggccccctaggtgagcaggggacgcgtggagaagct
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggtgaacctggcaca
cctggaaaccccggaccccccggcccacctggaccacccggcccaccagggctgggaggg
aactttgctgctcagatgtctgcaggctttgatgaaaaggctggaggtgctcagatgggt
gtgatgcaaggaccaatgggtcccatgggtccccgtggcccccctggacctagcggagct
cctgggcctcagggcttccaaggagcacccggagagactggagagcccggtccagctgga
ccgattggacctcgtggaccacctgggccatctggaaaaccaggaagtgacggcgatcct
ggaaaacctgggaaagccggtgagcgcggacctgcggggcctcagggagctcgtggattc
cctgggacacctggacttcctggaatcaaaggacacagaggtcaccctggtctggatgga
gcaaagggagagactggtgctgctggagccaagggtgaggctggtgctgctggagaaagc
ggcagtaatggacctatgggccctcggggtctacctggtgagaggggacgtcctggtgct
tctggagctgcaggagcccgtggaaacgatggcttgcctggtccagctggtcccccgggc
ccagttggtcctgctggagctcccggtttcccaggatccccaggcgccaagggtgaagcg
ggtccaactggcgcccgtggagctgaaggagcacaaggaccccgcggagaggccggcacg
ccaggatcacctggaccagctggagcggggggtaaccccggcactgatggtattcctggg
gctaaaggttctgctggggctcctggtattgctggcgcacctggcttccccggccctcgt
ggcccacctggaccacagggagcaactggacctcttggacctaaaggacaatctggagat
cccggtcttccaggactgaagggtgaatctggacccaaaggagagttgggccccgctggg
cctcaaggggcgcctggccctgctggagaagaagggaagcggggtgcaaggggagagccg
ggaactgcagggccaaacggacctccaggagaaagaggagctcctggcaaccgtggtttc
ccaggtcaggatggtcttgctggtgcaaagggagcccccggtgaccgtggcgtccctggt
gctgctgggccaaaaggtgccactggagaccctggacgtacaggcgaggccggcctccca
ggagccagaggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagct
tctggcgctccgggtgaggacgggcgacccggtccacctggaccccagggcgcacgcgga
cagcctggagtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaacca
ggagagaagggactcgttggtcgacctggtctgaaaggactacctggaaaagatggtgag
actggtccttctggacctcctggaccctctggacctgctggagagagaggagagcaagga
cagcctggacctcctggcttccagggtctgcctggcccaactggctccccaggagagggt
ggaaaacctggagatcagggtgttcctggagagggtggagctcctggtgctgttggaccc
agaggtgagcgtggtttccctggtgagcgcggtggcgctgggcctcagggtcttcaagga
ccgcggggacttcctggaacgccaggaagtgacggacccaagggagcaattggaccagct
ggagctgttggatctcaaggacccccgggcctgcagggtatgcctggagagagaggagct
ggagggatcccaggagccaagggagacagaggtgataatggacagaaggggcccgaaggc
gctcctggaaaagacggtggtagaggtttgactggtcccattggtcctcctggcccatcc
ggacccaacggtgccaagggtgagactggaccaactggtccttctggtgctcctggggtt
cgtggtgctcctggcgaccgcggtgaggttggccctcctgggcctgcgggctttgctggg
cctcctggtgcagatggtcagccaggtgctaagggagagctcggtgagcccggacagaaa
ggagaggctggtgcttctggacctcagggaccctccggagctcctggacctgtgggacct
actggtgtatctggacctaagggagcacgcggtgcccagggagctcctggagcaacaggt
ttccctggtgctgctggcagagttggacctcctggtcccaatggtaaccctggcgctgcc
ggacctgctggtcccgctggtaaggacgggccgaaaggcgttcgcggtgacgccggtcct
ccaggacggactggagacgctgggcttcgtggagcagctggagctccgggagagaaggga
gagcctggacctatgggacctcctggaagtgatggcccttcaggtccgcagggtttggct
ggaactcgtggtattgttgggttgcctggtcagcgcggtgagagaggtttccctggactc
cctggaccttctggagagcctggtaaacagggagcatctggtggtgctggtgaccgagga
ccacctggacccgttgggcctcctggactcactggacctgctggagagccaggcagagag
ggcacgcctggatcagatggacctcctggtagagatggatctgctggagtcaagggagag
cgaggtaacaccggtcccgcaggcgctcccggagctccaggcgcccctggggctcccggg
ccagttggacccctcggcaaacagggagacagaggagaggctggcgctcaaggacctgca
ggaccaccaggactgtctggcgctagaggaattgctggaccccaaggaccacgtggagat
aagggggaggcaggtgagtctggagagagaggtcagaagggtcatcgtggcttcaccggt
ctgcagggtcttcctggacctccgggacctgctggagatgccgggtctgctggacctgct
ggaccaagcggcgctaagggaccccctggtccacttggacctgctggcaaagacggatct
aatggacagcctggtcccattggaccccccggacctcgaggacgctctggagaaaccggt
cctgctggtcctcctgggaaccccggcccccctggtcctcctggcccaccaggtccaggc
attgacatctccgccttcgctggcatgggccagactgagaagtctcctgatcctctcagg
tacatgagggcagacgaggcctccagctccctgaggcagcatgacattgaggtcgattcc
acaatcaagtcgctcaacacccagattgagaacttgcgcagccctgacgggacccagaag
aacccggctcgctcttgcaatgacctaaagctgtgccaccctgagtggaagagcggtgac
tattgggtggatcctaaccttggaagcacagccgacgcaatcaaggtcttctgcaacatg
gagacaggagagacctgcgtctacccaagcatcacaaaagtaccaaagaagaactggtgg
accagcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggcggcttt
cacttcagctatgctcaggacggtcctgctgccagcgctgccaacgtccagctgaccttc
ttgaggcttctgtccactgaagcgtcccagaactttacttatcactgcaagaacagcatt
gcctacatggatcaggccacaggaaacctgaagaagtcgctgctactgcagggctccaac
gacgtggagatccgcgccgagggcaacagtcgcttcacgtacagcgtgttggaggatggc
tgcaagagccacacaggccggtggggcaagactgtctttgaatacaaaacacagaaaacc
tcccgtctgccaatcgtagacattgctccaatggacatcggaggagcagatcaagaattc
ggagtggatataggcgccgtctgcttcttgtaa

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