Poeciliopsis prolifica (blackstripe livebearer): 129370395
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Entry
129370395 CDS
T09758
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129370395 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129370395 (pan2)
Enzymes [BR:
pprl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129370395 (pan2)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129370395 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
129370395 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Motif
Other DBs
NCBI-GeneID:
129370395
NCBI-ProteinID:
XP_054902330
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MMNFEGLDPGMGDYPASLHGTLEAGLEPAMDPHLNPSLLQGVELDPEGLAVSVPEPVHLM
EGVFSELHSVVSEVGIPVTATHFDLQEEMLWMGNHRGHVTSYFGPTMGRHSSFQVHATDD
IRHIQSLETGVLFLSKNNLKCYTRGGLVMFDYPMEEGADMHSLLMTDNNTLLMGGLQNYV
VEVDLNTVQETQKFTVEIPGVAIMRQTSRFFFCGHTSGKVTLRDLRTFKTENEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLVIISQTGQCQFCEPTGLANVADIFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHLW
SDVPEVSFNDYSRETDFPLPCLVDTLPQLDWNHDLLPLSLIPMPLTSTEPLLSDWPTPLS
TPRPRRAPLVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKDVELDYDNYNQVPESPI
GRDEEPHLCMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKAKLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSAESAIGKL
FGCEVENSSLCRCGKETVRTSLTLLFTMHYPEQNSQDKTIKEYDFAEILKRSICLEQNTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKVQAECAYNKAMQKQPAKRT
EPPPMPTEWCLDGEEICNTEGFTFDTWAEDLRHVWIPATLKMSISKSQGLEIVSWSEGDE
ISAAEEADGVSLYDLVVTVPHIQDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLFNDFL
IEPIDKTEAAQFDVSWKVPAILYYAKRNYHSRYDLRIKNPIDASVLLTEASLARKQRKSH
ATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQG
PNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGV
RFVGHGLQKDFRVINLLVPKDQVIDTVYLFHLPRKRMISLRFLAWYYLDLNIQGETHDSI
EDARTALQLYRKYLELSRGGGSDEVRKVLKGLYEKGRQLDWKVPDSDTGDGKGAAVFPSV
MGL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgagggtttggaccctgggatgggtgactacccagccagccttcatggg
actctggaggccgggttggagcctgccatggacccgcacctcaacccgagcttgctgcag
ggcgtggagctggacccggaggggctggctgtgtcggtccctgagccagtgcacctgatg
gagggcgtgttctctgagctccacagcgtagtctcagaagttggcatcccggtcaccgca
actcattttgatctccaagaggagatgctctggatgggaaaccatagaggccatgtcacg
tcgtattttgggccaacaatgggccgccattcatctttccaagtccatgccacagatgac
atccgacacattcagagcttggagacgggggtgttgttcctctctaagaacaacctaaaa
tgctacactagaggaggtcttgttatgttcgattacccgatggaggaaggagctgatatg
catagtctcctgatgacggataacaacactctgctcatggggggattacagaactatgtt
gtggaagttgatctgaacacagttcaagaaactcaaaagttcacagttgagatacctgga
gttgcaataatgcgtcaaacgagtcgtttcttcttctgtggccacacatctggcaaggtc
acccttcgcgatcttcgcacctttaagacagagaatgagtttgacgcattttccggcagc
ctgtcggactttgacgttcacggaaacctcctggctgcgtgcggcttctccagccgaggc
ctgaacgggttggcctgcgaccgtttcttgatggtctacgacctccgcatgatgcgagct
gttactccgcttcaggtccacgtggatcccctcttcctgcgcttcattcccacctacaca
tcccgcctggtcatcatctcacagacaggtcagtgtcagttctgtgagcccactggtctc
gccaacgtggcggacattttccacgtcaacactgtcggtcagctgctcatgagcttcgac
gtttcgtcgagcaaacaagccttggcctttggggactcgggtgggtgtgtgcacctgtgg
tctgacgtcccagaggtctccttcaatgactactcccgggaaacagactttcctctgcct
tgtctggtggacacgctgcctcagctggactggaatcatgacctcctgcccctttctctc
atcccaatgccgctaaccagcaccgaaccgctgctgtcagactggccaactcctctatct
acaccacgtcccagacgagctcctctggtcgacccagaaatcctgcgcaccatgaaaacc
gttggtttcatcggttatgcaccaaatcctcgtacacgccctcgaaaccaggttccgtat
aagattaaagacgtggagctcgattacgacaactacaaccaggttccggagtcgcccatc
ggacgtgatgaagagccgcacctctgcatggtgcccaagaagtacaggaaggtcaccatc
aaatactccaaactggggctggaggactttgacttcaaacattacaacagaactttgttt
gcgggtctcgagcctcacatccccaacgcctactgcaactgcatgatccaggtgttgtat
ttcctggagccgatcaggtgtctggtgcagaaccatttgtgtcagaaggagttctgtttg
gcctgtgagctgggtttcctcttccatatgctggatttgtcacgaggagatccgtgtcag
gccagtaacttcctccgagcgtttcgcaccatccctgaagcctcggctctcggtctcatc
ctcgccgactctgatgagcaaactgggaaagccaaactgggacgcctgatccagagctgg
aatcgcttcatcctcacccagcttcaccaggagactcaggagcaggaaggcccgcaggcc
taccggggggccagcagcagctctctgggctcctccgctgagtcggccatcgggaagctg
tttggctgtgaggtggagaacagcagcctgtgccgctgtgggaaggaaacggtgcgaacc
tcgctcaccctgctcttcaccatgcattacccagagcagaactcccaggataaaacaata
aaggagtatgactttgctgagattctgaagagaagcatctgtttggagcaaaacactcaa
gcatggtgtgagaactgtgagaagtaccagcccacagttcaaacacgcaacataaggtgt
ctgccggatgtcctggtcataaactgtgaagtaaacagtgctaaagaggccgagttctgg
aaagttcaggcagagtgtgcgtacaataaggccatgcagaaacagcctgcaaagcggact
gagccgccacccatgcctacagagtggtgcttagacggggaggagatctgcaacacggag
ggtttcacctttgacacctgggccgaggatctgcggcacgtctggatccccgccaccctc
aagatgtccatcagcaagagccaagggctggagatcgtcagctggtccgaaggagacgaa
atcagcgctgctgaggaggcggacggggtttccctgtacgaccttgtggtcaccgtgccg
cacatccaggacgctcgcaccggcggaaacctggtcgcacacatcaaagtgggcgagacg
taccatcaaagaaaagagggagtcacacaccagcagtggtacctctttaatgattttctt
atcgaacccattgataagactgaagctgctcagtttgacgtcagctggaaagttccagcc
atcctctactacgccaagaggaactaccactccagatacgacctccgcatcaaaaatccc
atcgatgccagcgtcctgctgacggaggcgtcgctggctcggaaacagaggaagagtcac
gccaccttcatccccctcatggtcagcgagatgccgcaggcgggagacctggtggggctg
gacgccgagttcgttacgctcaaccaggaagaggcagagctgcggagtgacggcaccaag
tccaccatcaaacccagtcagatgtctgtagccaggatcacctgtgtgaggggccagggg
cccaatgagggggtccctttcatcgacgattacatctccactcaggagcaggtggtcgac
tatttgacgcagtactccggcatcaaaccaggagatctggatgctaaaatttcctccaaa
catttgaccacactgaagtccacatacctgaagcttcgcttcctcatcgacaccggcgtc
cgcttcgtcggccatggtttgcagaaagactttcgggtcattaatctcctggtccccaag
gatcaagtcatcgacacagtctatcttttccatttgccccggaagagaatgatttcttta
agattcctcgcttggtattatttagatctcaacatccagggggaaacccacgacagcata
gaggacgcacgcaccgccctgcagctctacaggaagtacctggagctcagccgcggaggt
gggagcgacgaagtaaggaaggtcctgaagggactctacgaaaaaggccgccagctggac
tggaaagtcccggattcggatactggagacggtaaaggcgctgctgtgtttccctcagtg
atggggctgtga
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integrated database retrieval system
