Poeciliopsis prolifica (blackstripe livebearer): 129370981
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Entry
129370981 CDS
T09758
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129370981 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129370981 (smg5)
03032 DNA replication proteins [BR:
pprl03032
]
129370981 (smg5)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129370981 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
129370981 (smg5)
DNA replication proteins [BR:
pprl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129370981 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
129370981
NCBI-ProteinID:
XP_054903275
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASSREMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDV
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRVLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPAPTHGGAPPCPSEEEEEQTQHSDSSYPVLPDNLIF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEDGESQVPALHTD
AADDLEMRDISAAEVDPAEEKPLQNGSLEQEDEEDKDEDGPERVRVKKQSSEEDQHKAGE
EKQRQKKKYTRLSRLRRRRCAHKGGQGEDESDLSEGFESEEDEDDDEGGRVRADSTGGTP
IDEPLNPSSVKKETKRDGLGEEGSWESGSEEEEGGTAFDVETDSDMNSQESRSDLEDMED
TENSDSTEGQAREQQEEEEEQPKEEDGERDGEAPPSTNGPLMQSDASISSNLQAMSSQLF
QSKRCFRLAPTFSNMLLRPQAASGSTPTDTSAPPSQEIPPPPGDSHCDLNPGTANGTNDN
DLDSDSEESQHSAHSEKTLLEKLEILSNQGLMQVVKVFVDWLRTNTDIILMCAQSSQSLW
NRLSVLLNLLPDGSKLLEADLGLNSEVTEMLKECEQPGLSQTLLLPEDVALRHLPALSVA
HRRLDFSRCNASLNPLQECVLRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDN
LVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDAAA
LCHHLNLIRHLAGSGCFIIIIPRTVIDGLDRLKKENGGARDGIRFLESEFRKGNRYIRCQ
KESGRTFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTILTGHEVDELCA
RSAAMKSVTQAASSAGMELKNIVEFYRQWKEIG
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagcccgaggcgaaagtccttcttatcaagcggctt
tacagggctgtggtggaatctgtgcacaagctggatgtcatcatcggcagcaagtcatcc
tacagagaggtcttcaagccggagaacatcagcctgcggaacaagctgagagagctttgt
gtaaaattaatgtttctgcatcctgttgactacggccgtaaggccgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagacaaacaagaagcacatccacagc
cgcagtgccctggagtgcgcctacagaacgcacctcatcgccggcgtgggtttctaccaa
catctgctgctctacatccaatcacattaccagctggagctgcaggactgcatcgattgg
acacacgtcactgatcctctcatcggacggaagaaacccgtgtcagcctcttcgagagag
atggagtgggctcagatggcgtgtcatcgctgtctggtctacctcggagatctggcgcgc
tatcagaacgaacttgctggagtggaagctgaacagctggcagagagattttaccaccaa
gccttgtctgtcatgccccatgttgggatgccttttaaccagctgggaacactggcagga
agcaagttctacaatgtggaagcaacctactactacctacgatgcatccaatcagatgtt
ccgtttgagggggcctacggcaacttgaagcgtctgttcgacaaagctgccaagatgtac
caccaggtgaagaaacaggaaatgaagaagctgtctccgtctcggcaaagatccaaagac
attaagcgtgtcctggtgagcttcatgtatcttcagagtctgctgcagcctaaaaacagc
ttgatggagacggagctcacttcgctctgccagtcggtgctggaggacttcaacctggtt
ctgttttatcttccggctccgactcacggaggcgctccaccctgtccgagtgaggaagag
gaggagcagacgcagcacagcgacagttcctaccccgttctgcccgacaacctcatcttc
aagatggtggtcacatgcctcatggtcgtacacagccttaagagaggaggatctaagcag
tacagcgcatccatagcgtttacgctggctctgttctcccacctggtgaaccacgtgaac
atccggctgcaggctgaactggaggacggggagagccaggttcctgcgctgcacactgac
gctgcagatgaccttgaaatgagggatatctcagctgcagaagtggatccggcagaggag
aagccactgcagaacggttccctggagcaggaggatgaggaggataaggatgaggacggc
cctgagcgggtccgagtcaaaaagcagagcagtgaagaagatcagcacaaggcaggagag
gagaagcagagacagaagaagaagtacacccgcctttctcgactgcggcgccgccgctgc
gcgcataaaggcggacaaggggaggacgaaagcgacctgagcgaaggattcgagagcgaa
gaagatgaggatgacgatgaaggaggaagggtccgtgctgattccacaggtgggacgccg
atagatgaaccgctcaacccttcgtctgtgaagaaggagacgaagagggacggcctgggt
gaggaaggcagctgggagagtggctctgaggaagaggagggagggaccgctttcgacgtg
gagactgactcggacatgaacagccaggagtcccgctcagacctagaggacatggaggac
acagaaaactcagacagcaccgagggtcaggcccgggagcagcaggaggaagaggaggag
cagcccaaggaggaagatggggagcgggacggtgaggccccgcccagcaccaacggtccc
ctcatgcagagcgacgctagcatcagcagcaacctgcaggccatgtcctcccagctcttc
cagtccaaacgctgctttcgcctcgcacccaccttcagcaacatgctgctgaggcctcag
gccgcctcaggctccacccccactgacacctctgccccgccctcccaggagattccccct
ccgcctggagactcgcactgcgacctgaaccccggtactgccaacggaaccaacgacaat
gacttggactctgactcggaggaaagtcagcacagcgcccacagtgaaaagaccctgctg
gagaaactggagattttgtccaatcagggattgatgcaggtggtgaaggtctttgttgat
tggctcaggacgaacacagatatcatcctcatgtgtgcacagagttcgcagagcttgtgg
aaccgtctgtcggttctgttgaaccttcttccagatggcagcaagttgctggaggctgat
ttggggctgaactcggaggtgacagagatgttgaaggagtgcgaacagccgggtttgagc
cagactctgctgctgcctgaggatgtggcgctgcggcacctgcctgcgctcagcgtcgct
caccgccgccttgatttcagtcgctgcaacgcctccctcaatcccctgcaagagtgtgtg
ttgcgagtgtgttgcattcgtagttttggccacttcctaacaaatctccaaggcaacgtg
ctgcacttcaacccagaggcgggaatctttaccagcatcagccagtcagaacaggacaat
ctggttcagcaggctaaggcccagttcaggatggcggaagaggaggcccgtcggaatcgt
ttgatgagagacatggcccaacttcgactgcagttggaggtttcacagctagagggcagc
cttcagcaacctaaagcgcagtcatccatgtctccctaccttgttcctgacgctgccgcc
ctctgccatcatctgaacctcatccgacacctggccggcagcggctgcttcatcatcatc
atcccaagaacagtgattgacggactggatcggctaaaaaaggaaaatggtggtgcaaga
gacgggatccgcttcctggagtcggaattccgcaaaggaaacaggtacatacgttgtcag
aaggagtcgggtcgcacttttgagagagataaactgaagcggcaggacatcgaagcttgg
catctgtataagatggtggacagctgccgacagctgacggtgtcccagagcaatggagac
gaagacacagccggcatggtgaccatcctgacaggacatgaggtggacgagctctgcgct
cggtctgccgccatgaagtcggtgacccaggccgcgtcgtccgcaggcatggagctgaag
aacatcgtggagttctaccgccagtggaaggagatcggctga
DBGET
integrated database retrieval system
