Poeciliopsis prolifica (blackstripe livebearer): 129372684
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Entry
129372684 CDS
T09758
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129372684 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129372684 (cnot1)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129372684 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129372684 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
129372684
NCBI-ProteinID:
XP_054906129
LinkDB
All DBs
Position
Unknown
AA seq
2405 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTIMESSLADFIREVGYSFCASLDDCRNIILQYGVREVTASQVARVLGMMAQT
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHSGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRSWKHAEGQLSFIQYSLMNPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSACDKQTMD
TLTGISALSLGSTATSHTQSMQCFATSLSSALSNPLSPSKAFPPLPNPNPTTPFGVHSSI
SSQLPGMDSAISSSISSSIGSSMGSSLGMPSVSTDPFGTRKMSTPVLNPPTFQQSKMKAS
DLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREV
FNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFG
SKMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVK
MQGSITTPGSVALAHAQAQSQQPPSLKAPQPGQPSTLAATTTTTTTTAAKTGTISRPTQS
TFKKDMPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKE
TVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSD
KAAANFSDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVA
KVLESSLRSMVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPG
NLLKEKEKLKNLEEQLSAPKKEAKPPDEILPPPTTGDFVPFPAPSTTPAATTTTCTTTGP
PTPQFSYHDINVYALAGLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRS
IKIAMTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNS
FAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKH
ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDSKQLAVYEEFARNIPGFLPSNDLSQPT
GFLAQPMKQQAWATDDVAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRNLLEAVALARN
SRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQIT
RCLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLV
DDRSVSHVTEADLFQTIEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFM
MHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKT
DDLITRFFRLCTEMCVEISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSG
EATNTVTKINLLNKVLGIVVGVLIQDHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETI
NFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDL
FKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
ILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVT
FLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVME
GTGAS
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactacagagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgctacgccatcgacaatcccctacac
tatcagaagagtttgaagccatccacccacctgtttactcaactgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctgcttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaaacttcccgaccttctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggcttccaagacattcccatagaggtg
ttgcacctgcttctctcccatctactgttcggacagaagggagccagtggggtaggacag
gagcagattgacgccttccttaagacactttgccgagattttccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
ccagactctggggagttagctaagaccatcatggagagttctctcgcagacttcattcgg
gaagttggttacagcttttgtgccagtcttgatgattgcagaaacataatcctccagtat
ggggtgagagaggtgacagccagccaggtggccagggttctgggaatgatggcccagacg
cactccggcctgtctgatggcatcccacttcagtccatttctgctccaggaagtggaatt
tggagtgatggtaaggacaagaacgatggctcacaggcacatacgtggaatgttgaggtt
ctcattgacattgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacgtatgaa
ctggaccactccggatttctgatccgggacagcaagggtctgcagatcgtggtgtatggg
atccagcggggcctggggatggaggtcttccctgttgatctcatttaccgctcatggaaa
cacgcagagggacagctgtcgtttattcagtactctctgatgaacccagaagtgttctgc
tttgctgactatccgtgtcacactgtggtcattgacctccttaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtctcctcagactc
tctgagcttgggcaatacgaacaggtgaagcagctcttcagcttccccatcaagcactgc
ccggacatgttggtgttggctctactgcagatctccacctcctggcacacgttgcgccat
gagctcatttccaccctcatgcccatctttcttggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggtcagtctccttccattcgtcagctgattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatgctactccgtttgcc
tttgtcattgacctcgctgcactcgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgggagcatggagaaccattcatccaggcatgtgttacgtttctg
aagagacgctgcccgtccatcatgggaggtctggctcctgacaaggaccagcccaaaagt
gcccagctgcccccagagactttagccaccatgcttgcctgtttgcagtcatgtgcaggg
agtgtgtcccaggaattgtcggagacgatcctcaccatggttgccaaccgtagcaatgta
atgaataaagctcggcagcctccaccaggagtgatgccgaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacaggtatcggcatgtgacaaacaaacgatggac
actctgactggaataagcgccttgagtctgggcagcactgccacctcccacactcagagc
atgcagtgcttcgccacctcactgagctcggctctcagtaaccctctatccccctcaaag
gccttccctcctcttccaaacccgaacccaaccacaccttttggggttcatagcagtatc
agttcccagcttcctggtatggactctgccatcagctccagcatcagctccagcatcggc
tccagcatgggttccagtctgggaatgccgtcagtcagcacggatcccttcggcaccagg
aagatgagcacaccagtcctgaaccctcctacctttcagcagagtaagatgaaggcctcg
gatctttctcaggtgtggcccgaggctaaccagcactttagtaaggagatcgacgacgaa
gcaaacagttacttccagcgaatctacaaccatccacctcacccgaccatgtctgtggac
gaagttctggagatgcttcagaggtttaaggactcaaccatcaagcgagaacgagaggtg
ttcaactgcatgcttcgaaatttatttgaggaatatcgattcttccctcagtacccggac
aaagaactgcacatcactgcctgcctatttggtggcatcattgagaagggtctggtcacc
tacatggcgctgggtctggccctgcgatacgttctcgaagccttacggaaaccgttcgga
tccaaaatgtattactttggaattgctgcactggatagattcaaaaacagacttaaagac
taccctcagtactgtcaacacttggcttcaattgctcactttttgcaatttccacaccat
ttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgtgaccctccggtgaag
atgcagggatccatcacaacacctggaagcgtcgccctggcccacgctcaggctcagtcc
cagcagccgcccagcctcaaagccccccagccgggccagcccagtacactggctgccacc
accacaaccacaacgaccactgcagccaaaacaggcaccatctcaaggcccacgcagagc
accttcaagaaggatatgcctccttccataaacactaccaacatcgacacgcttctggtg
gcgacggatcaaaccgaaaggattgtagaacctccagagaatgtccaagagaagattgct
ttcatcttcaacaacctttctcagtccaacatgacacagaaggtagaagagttgaaggaa
actgtgaaggaagagtttatgccgtgggtgtctcagtacctagtgatgaagcgcgttagc
attgagccaaactttcacagtctctattccaactttttggacacactgaagaacccggag
tttgtcaagatggttctcaatgagacttacaggaatatcaaggtgcttttaacctctgac
aaggcagctgctaacttctccgatcgttccctgctgaagaaccttggccactggttgggc
atgatcacactggccaaaaacaagccaatcctctacacagacctggagctcaaatctctc
ttgctagaagcctatgttaaaggccagcaggagctcctctatgtggttccctttgtggcc
aaagtcttggagtctagcctacggagcatggtcttcagacctcagaacccttggaccatg
gccatcatgaatgttctcgctgagctccatcaggaacatgacctcaagttaaatttgaag
tttgagattgaagttctgtgcaagaacttgtctctggacatcaacgagctgaagccgggg
aacctgctgaaggaaaaagagaagctgaagaacctggaggagcagctgtctgcaccaaag
aaagaagcgaagccaccagacgaaatcctgccgcctcctaccacaggtgactttgttccg
tttccagctccttccacaaccccggctgccaccaccaccacctgcaccaccaccgggccg
cccacgcctcagttcagttaccatgacatcaatgtctacgccctggcaggcctggcgcca
catatcaacattaatgtcaacattgctctgctgcaggctcatcctcagctcaagcagtgc
gtgcgtcagtctgtggagcgagcggtccaggagctggtgcaccccgtggtggaccgttcc
atcaaaatagccatgacaacctgtgagcagatcatcaggaaggactttgccctggattca
gaggagtctcgcatgcgcgtagccgcccaccacatgatgagaaacctgaccgctggcatg
gccatgatcacctgccgcgagccgctgctgatgagcatcgccaccaatctgaagaacagc
ttcgctgcggcgctcagggcgccgacgccacagcagagagaaatgatggaggaggctgca
gccaggattgctcaggataactgtgaactggcctgttgcttcatccagaaaactgcagtg
gagaaagctggacctgaaatggacaagcggctggccacagagtttgagctgaggaagcac
gcgcggcaggaaggccgtcgttactgcgaccccgttgtcctgacctaccaggctgagcgc
atgccggaacagatcagactcaaggtgggaggagtggactctaaacagctggctgtttat
gaagagtttgcgaggaacattcccggtttcttaccaagcaacgatctctcccaacccact
ggcttcctggctcaacccatgaagcaacaagcctgggccactgacgacgtggctcagatc
tacgataaatgcatcacagacttggagcagcaccttcatgccattcctccagcgctcgcc
atgaacccgctgacccagggtctgcggaacctgctggaagccgtggctttggcgcgaaac
tccagggacggcattgctgccctcggcctcctgcagaaggccgttgaaggtctcctggac
gccaccagtggtgctgatgctgacctgctgcttcgctacagagagtgccacctgctggtg
ctgaaagctctgcaggatggacgggcctatggaccgcagtggtgcaataagcagattacc
aggtgtctgattgaatgtcgggatgaatacaagtataacgttgaagcagtggagcttctg
atcaggaaccatctggtgaacatgcagcagtatgatgtgcacctggcgcagtcgatggaa
aatggactccactacatggcggtcgcatttgctatgcagctggtgaagctgctgctggtg
gatgaccgcagcgtgagtcatgtcacggaggccgacctcttccagacaattgagattctg
atgagaacctgcgcacactccagagccaacgcaccagaagggcttccccagctgatggat
gtcgttcgctccaattacgaagccatgattgatcgagcacatggaggacccaacttcatg
atgcactctgggatttcacaagcttccgaatacgatgatcctccaggtctgagggagaag
gcagagtacttgctgagagagtgggtcaacctgtatcactcagctgcagctggcagggac
agcaccaaagctttctctgccttcgttggccagatgcaccagcagggcatactgaagacc
gatgacctgatcacgcggttcttccggctgtgcacagaaatgtgcgtggagatcagctat
cgtgcacaggctgaacagcagcacaacccagcagctagcgtagccatcatcagagccaaa
tgttaccacaacctggatgccttcgtccggctcatagccttgctcgtgaagcactctgga
gaggccaccaacaccgtgactaagatcaacctgctcaacaaggtcctggggattgttgtc
ggagtgctaatccaggaccacgatgtccgtcacacggacttccagcagctgccgtaccat
cgcatttttatcatgctgctgttggagctcaacgcgcctgaacacgtcctggagaccatc
aacttccagacactcactgccttctgcaacacattccacatcctgagacccaccaaagct
cccggcttcgtgtacgcctggctggaactgatctcccatcgcatcttcatcgccaggatg
ctggcgcacacgccccagcagaagggttggcccatgtacgcacagctgctgattgacctt
tttaagtatctggctcccttcctgaggaacgtagagctcaacaaacctatgcaaatcctc
tacaagggcacactgagggtgcttctggtcctgctgcatgatttcccagagttcctctgt
gattaccattatggcttctgtgatgttatcccacccaactgcatccagctccgcaacctt
atcctcagtgccttcccacgcaacatgaggcttccagatcccttcacgcccaacctaaag
gtggacatgctgagcgagatcaacattgctccacgtatcctcaccaacttcacaggcgtt
atgccgtctcagttcaagaaggatctggactcctatctgaagacgcgctcacctgtgact
ttcctgtctgagcttcgcagcaacctgcaggtgtcgaacgagccaggaaaccgctacaac
atccagctgatcaacgcgttagtgttgtatgtcggcacacaggccattgctcacatccac
aacaagggcagcaccccgtccatgagcaccatcacacactctgcacacatggacatcttc
cagaacctggctgtggacctggacactgaagggcggtacttgttcctgaacgcgatagcc
aatcagctccgctacccgaacagccacacccactacttcagctgcaccatgctctacctg
tttgctgaggccaacaccgaggccatccaggagcagatcaccagggttctgctggagagg
ctgatcgtcaacagacctcacccctggggactcctcatcaccttcatcgagctgatcaag
aatcctgccttcaagttctggagtcacgactttgttcactgtgcgcctgagatcgaaaag
ttgttccagtccgtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggag
ggcaccggtgccagctaa
DBGET
integrated database retrieval system
