Poeciliopsis prolifica (blackstripe livebearer): 129373174
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Entry
129373174 CDS
T09758
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129373174
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129373174
BRITE hierarchy
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129373174
NCBI-ProteinID:
XP_054906935
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MEKEVKRHCRTTALNIISSLCSVASIAFCVHLSISAADIKSRVVGLESGTSERTFIQVRG
HSMEDFNSLVQQRVDELLSQRSYENFAKIRTARQASPECNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRGLPGLPTLAALHSNQILTVKMVFPKINHGFLSADQQLIKRR
LIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGLPGLPGDPGQPGEIGLMGLEGPQ
GPKGSLGPPGIPGTDGLKGDVGIPGQDGIPGAKGEKGEQGEKGDMGEDGPKGDMGEKGDA
GSSAAGIKGEPGEPGRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKG
DHGPAGKGDRGEIGPAGPKGSQGESGMPGPKGSKGDTGDKGDLGSVGPRGPPGQKGDRGA
TEIIDYNGNIEEALQRITTITVTGPPGPPGPIGPPGFKGDRGLPGLPGLDGERGYKGSKG
DMGMPGASGEKGSTGLPGLPGINGAKGDKGDPGLPGPQGPSITGPPGPPGPHGPSGPMGP
HGFPGPKGEPGLHGLKGMRGEPGHKGDRGHMGLPGASGLDGKPGIRGTDGPPGPAGPAGP
KGDIGEKGAPGEPGPRGPYGLPGAAGTPGLDGLPGLKGDKGDDGGRGEKGEKGKKGKKGP
KGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagtgaagcgacactgtcgcacgacagcgctgaacatcatctcgtcttta
tgttcagtggcgtccatcgcgttctgcgtccatctgagcatcagcgcggcagacatcaag
agccgagttgtgggtttggagagcgggacgtcggagcgcaccttcatccaggtccgtgga
cactccatggaggatttcaattctctggtgcagcagagagtggacgagttgctttctcag
cgctcttatgagaatttcgccaagatcaggacggcaagacaagcctcacctgagtgtaac
tgccccccaggacctcctggtaagagaggaaggagagggcgcgacggagaacctggtcct
cctggtcctccaggcccacagggagaaaagggagatcaaggtgaccagggaccacgggga
ttgcctggtctccctacgctggctgctttgcacagcaatcagatcctgactgtcaagatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctcattaagggagatcaaggccaggcaggaccacccgggcctccaggcccacctggccct
ccaggaccaaggggccctccaggggacactggaaaggatgggcccagaggtttgccaggt
ctaccaggtgatccaggccagccaggagaaattggactcatgggacttgaggggcctcaa
gggccaaagggttcactggggcctccgggtatccctggaacagacggactaaagggagat
gttggcatcccaggacaggacggaatcccaggggccaagggtgaaaagggagaacagggt
gaaaagggcgatatgggtgaagacggaccgaaaggtgacatgggcgagaagggtgatgca
ggctcctctgcagcaggcatcaagggcgaaccgggagaacctggacggagtggacagaag
ggagagccaggacttccagggctgcctggactcccagggataaagggtgagccaggattc
ctcggcccccagggagaaccaggacttccaggactcccaggaactaaaggcgagaaaggt
gaccatggaccagcaggaaagggtgatcggggagaaatcggacctgctgggccgaagggt
tcacaaggggaatctggtatgcctggacctaaagggtcaaagggggatactggagataaa
ggagatctgggatctgttggcccaagaggtcctcccgggcagaaaggagacagaggagcc
actgaaatcatcgactacaatggaaacatcgaagaagctctgcagaggattaccactatt
acagtcacgggtcctcctgggccacccggaccaataggaccaccaggcttcaagggagat
cgcggtctgcctggtcttcctggactcgatggggagagaggctataaaggttccaaggga
gacatgggaatgcccggagcgtcaggggagaaaggaagcactggtttacctggcttacct
ggaattaacggagcaaaaggagacaaaggagatccaggacttccaggtccgcaaggtcca
tctataactggccctccagggccaccaggaccccacgggccctcaggacccatgggaccc
catggcttcccggggcctaagggagaacccggtttgcacggactaaagggcatgagaggg
gaaccgggacacaaaggagatcgtggacatatgggtctccctggagcctccggcttggac
ggcaagcccggaattaggggcacagacgggcctcctggtccagctggtccagccgggccg
aagggtgacattggtgagaaaggtgcaccaggtgagccaggacctcgaggaccttatgga
ctacctggagccgccggaacgccaggtttggatgggttacctggattaaaaggagataaa
ggcgacgatgggggaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcct
aagggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggtccg
gatggattaccaatgcctggttgctggcagaagggagtcacaccatggcttgtagcctga
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