Poeciliopsis prolifica (blackstripe livebearer): 129373443
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Entry
129373443 CDS
T09758
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129373443 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129373443 (exosc8)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129373443 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129373443
NCBI-ProteinID:
XP_054907332
LinkDB
All DBs
Position
Unknown
AA seq
277 aa
AA seq
DB search
MATGFKIAEPLEYHRSFLKENCRPDGRELSEFRTTTLNIGSISTADGSALVKMGNTTIIC
GIKAELANPTAEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIESSEVIK
AEDLCVDRGKLCWVLYCDIICLDYDGNILDACIIALLAALKNTQLPEVTVNKETCSPEVN
LEKRQRLHILKHPASASFCVFDDSILIVDPTAEEESLSTAHLTVVTDEEGRLCSVHKPGG
TSLSGDKLQECINRATARQREIHKLIHMVLDSVKTTK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgggttcaagattgcggaacctctggagtatcacagaagctttttgaaagaa
aactgtcgacctgatggacgggagctgtctgaattcagaaccacaacactgaacattgga
tccatatccacagcagatggttcggcattggtgaagatgggaaacacaacgattatctgt
ggaatcaaagcggagctggcaaaccccacagcagaggcccctggtaaaggttacattgtg
cccaacgtggatttgcctcctttgtgttcgtcccgctttcggcccggtccaccaggagaa
caggcccaggctgccagccagtttattgctgatgttattgagagctctgaggtgatcaaa
gcagaggacttatgcgtcgacagaggaaagctttgttgggtgctctactgtgacattata
tgtctcgactatgacgggaacattctggacgcttgtattattgccctgctggctgccctg
aagaacacacagctcccagaagtcaccgtgaacaaagagacatgttcaccagaggtgaat
ttggaaaagcgacaaaggcttcatattctcaaacatcccgccagtgcttccttttgcgtc
tttgatgactctatcctgattgtagaccccacagctgaggaggaaagtctgtcaacggct
cacctcactgtggtcacagatgaggaaggtcgtctctgttctgtacataaaccaggtgga
acgtcactttcaggagacaagctgcaggagtgcatcaaccgagcaacagcccggcaaaga
gagatccacaaactcatccacatggttctagacagtgtgaagacgacaaaataa
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