Poeciliopsis prolifica (blackstripe livebearer): 129373620
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Entry
129373620 CDS
T09758
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03440
Homologous recombination
pprl03450
Non-homologous end-joining
pprl04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129373620 (rad50)
03450 Non-homologous end-joining
129373620 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
129373620 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprl03032
]
129373620 (rad50)
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129373620 (rad50)
DNA replication proteins [BR:
pprl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
129373620 (rad50)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
129373620 (rad50)
BRCA1-C complex
129373620 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
129373620 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
129373620
NCBI-ProteinID:
XP_054907621
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQIISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIQRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEDSNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRIKQSQTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDS
VQQTENQIEPLENRLMEFDQKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEELQEIYQNHQRTVKEKERRLTDCQRELERAGRECQRLNRVKAELLVEQGRLQLEADRH
TQNVKSRDTLVRSLSSHLEMEGYDRPPFTSLQLESFHRHVSQRLEQEKETLSQIIADLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDMQGKKQQELRNIRADLQKLEGSSNRLQELENE
LVKNERELERAVQSSNVEGLKTEIEELQREKTELDRAQRRLDQEMQILNTHTTARTQMDM
LKKDKTEKEEQVRKTKARHGEDLMSLLGHFPNKRELEDWIYSKSKEINSTRDKLAKLNKD
LASSEQNKSHIAAELRKKEQQLSSDEEKFFSLCGSQDLEQDLGRLQEDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMMALKPVRQAIVQFQEKELPELRNRLQTVNREIERLKAEVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKELDRKIAQQAAKLQGVDLSRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQILKSAVNETRAEKLQLSSDMQKQQQLEEQCIDFTAEIQA
LTRDIREAKEQLSPLSSALEKLQQEKQELMEHKRKKQEEGQEKINGIKERVKSVSSLERD
IKKYMDDGREEYKEQKESELQETNTQLHEAEKQKEKISKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKRQTLLKDMGNMQVLQLRQERRDAEHKLEELKKNRSIALGRQKG
FEEEILHYRKELREDQYDKAEERYKNKMITMRTTELVIKDLNLYYKALDQTIMRFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAEVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIENFYRIRKNQDQNSEINKCSISSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaaaatgagcatccttggtgtgaggagttttgggattgaggataaa
gacaaacaaatcatttccttttttactcctttgactgttctggtgggaccaaatggagca
gggaaaacgactattattgaatgcctaaagtatgccacatcgggagaacttccccctgga
tctaaaggaggagcttttgttcatgatccaaaggatgcccatgagaccgacgtacgagct
cagattcgactcttgttttcagatgtgaatggggagaaagtcaccattcagcgctcaatg
tcctgcacacagaaagcaaagaactattcattcaaaagcttagagcaggtcattactaga
ataaaagatggtgaaaaagtaagcctttcttctaagtgtggtgagctggatcgggagatg
atttctgctttaggagtatccaagccggtgctgaatcatgtcatcttttgtcaccaagaa
gattccaactggccacttagtgagggcaaagcactcaaagacaaatttgactccatcttt
gctgcaaccaaatatattaaggcactggagacaatgcgtcagctgcgcatcaaacagagt
cagacagtcaaagaatgccaagtggagttacgctacctgaagcaaaacaaggagaaggct
cagcagatcagagagactgtggccaccaaggaggctcagctgatggcctccaaagacagt
gtccaacagacggagaaccagattgagccgctcgagaatcgactgatggagttcgaccag
aaactggggaaggtaatgaagttggacaatgacattaaggctttggacagcaggaagaaa
cagatggaggaggacaacaaagagctggaggaaaccatggaacaggtgtttcagggttca
gatgaggagctacaagaaatttaccagaaccaccagaggacagtgaaggagaaggagcgc
aggttgacagactgccagagagagctggagagagccggtcgggaatgtcagagactcaac
agagtgaaggccgaactcttggtcgagcaaggtcgtcttcagctggaagctgatcgccat
actcagaacgtcaagagccgcgacactctggttcgctctttgtcatcccatctggagatg
gagggttacgaccgcccccccttcacctccctgcagcttgaaagctttcatcgtcacgtc
tcacaaagactggagcaggagaaagagacactcagtcagattatagcagatctgcaggaa
aaggagcaacagaagcagcagtctatcgatgaaatgagggataagaagactggcctggag
agaaccgtagagctgaagagggacatgcagggaaagaagcagcaggaactgaggaacatc
agggcagatctgcagaaactcgaagggtcgtccaatcgattgcaagagctggaaaatgaa
ttggtcaaaaatgagcgtgagctggaacgtgccgttcagagctccaatgtcgaaggtctg
aagactgagattgaggaactccagagagaaaagactgagcttgaccgggcgcagagacga
ctcgatcaagagatgcagattcttaacacacacacaactgcacgcacgcagatggacatg
ttgaagaaagataaaacagagaaagaggagcaggtacggaaaaccaaggctcgtcacggc
gaggatctcatgtccctcctgggtcattttcccaacaagagagaactggaagactggatc
tattccaagtccaaggaaatcaatagcacaagggacaaacttgccaaattaaataaggac
ttggcatcaagtgagcagaacaaaagccatattgctgctgagttgcggaagaaggaacaa
caactaagcagcgatgaagagaagttcttcagcttgtgtggcagtcaggatctggagcaa
gatttgggaaggctgcaggaagatctggagaaagtatccaaacaaagagccatgttagca
ggagccacagcagtgtacactcagttcatcagccagctgacagaggagagggagccctgc
tgccctgtgtgccagcggacctttccttcagagtctgacctgcaggaagttatcagcgac
atgcagtccaagctacggctggtgcctgacaaactgaagaacacagagcaggacctgaag
aggaaggagaggaagagggatgaaatgatggcactcaaacctgtgagacaggccattgta
cagtttcaggagaaggagttgcctgagctgagaaaccgacttcagactgtgaacagagaa
atcgagaggctcaaggcagaagtagaagaacaggagacgctgcttggtaccttaatgtct
gaggaggaaacagccaaggcctgtctgcaagacatctctctcatggacagatacttgatg
gaccttaaagagctggacagaaaaattgctcagcaggcagctaaactccagggagtagac
ctgagtagaaccattcagcaagtcagtcaggagaaacaagaaacccagcacaagctggac
accacctctagcaaaatggagctgaaacgtaagctgatccaagaccaacaggaccagatt
cagatcctgaaaagtgctgtaaatgaaacaagagcagagaagctgcagctaagcagcgac
atgcagaaacagcagcagctggaagagcaatgtattgactttactgcagagattcaggct
ttaaccagagacattagggaagcaaaggaacaattgtcacctctgtcttctgctttggaa
aagctgcaacaagagaaacaagagttaatggagcataaaagaaagaaacaagaagaaggc
caagagaagatcaatggcataaaagagagggtaaagtctgtctccagtttggaacgagat
attaaaaaatacatggatgacggaagagaggaatataaagagcaaaaggaatctgagctt
caagaaaccaacactcaactccatgaggctgagaagcagaaagaaaaaattagtaaggag
atgggaaacatccgtcaggacatagatacccaaaaggtacaagagcgctggttacaagac
aatctgacattaaggaaacgagttgaggaactgaaggaggttgtagctaaacgacaaact
cttctgaaagacatgggcaacatgcaggtgttgcagctgcgccaagaacgtcgtgatgca
gaacataagttagaagagttgaagaagaaccggagcatcgcactcggtcggcagaaaggc
tttgaagaagagattctgcattacagaaaagagttgagagaagatcagtatgacaaagct
gaggagcgctacaaaaacaagatgatcaccatgaggaccacagagttagtcattaaggac
ctcaatctctattacaaagcccttgatcaaaccatcatgaggttccacagtatgaagatg
gatgagatcaataaaattatcagagacctgtggcgcagcacctataggggtcaagatatt
gagtatgtggagatcaggtcggatgtggatgaaaattcatcagctgaagtcaagaggagg
gtttacaactacagagtagttatggtgaaaggagacacagctctggatatgagaggacgc
tgcagtgctggccagaaggtgttggcgtccctgatcatccgtcttgccctggcagagact
ttctgtctgaactgtgggatcttggccttggatgagcccaccaccaacctggacagagaa
aacatcgagtccttggcacatgcccttgtagaaatcatcaagagtcgttctcgtcagcgc
aattttcagctgctcatcatcacccacgatgaagactttgtggagctcctgggccgctcc
agctacatcgagaacttctaccgaatccgcaagaaccaggaccagaactctgaaatcaac
aagtgcagcatctcctctctctcgtcttatctccattaa
DBGET
integrated database retrieval system
