Poeciliopsis prolifica (blackstripe livebearer): 129373623
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Entry
129373623 CDS
T09758
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03030
DNA replication
pprl03420
Nucleotide excision repair
pprl03430
Mismatch repair
pprl03440
Homologous recombination
pprl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129373623
03420 Nucleotide excision repair
129373623
03430 Mismatch repair
129373623
03440 Homologous recombination
129373623
03460 Fanconi anemia pathway
129373623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprl03000
]
129373623
03032 DNA replication proteins [BR:
pprl03032
]
129373623
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129373623
Transcription factors [BR:
pprl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
129373623
DNA replication proteins [BR:
pprl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
129373623
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
129373623
MMR (mismatch excision repair)
129373623
DSBR (double strand breaks repair)
HR (homologous recombination)
129373623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
DUF4964
TPPII_C
Motif
Other DBs
NCBI-GeneID:
129373623
NCBI-ProteinID:
XP_054907626
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MTAKLTQGAVEALVKGSHVENPVLQLLNIRQIDTTGVPRYRLMMSDGQHYFSSFLMATQL
NHLAEENLLVPHCVCLLKRMTNNTLSDGRHVVIVLDMEVLKSAEEAAGKIGNPTSYSTDG
KLPSPNKVSSTTSEPSSTSAAEEPGPSNNSKGWGKGFSGKAPVKASPMKTFPMKGSPMKT
SPMKASPMMTSPMKGSPMKSSPMMTSPMKGSPMKAATSSPGSAPKVMPIATLNPYISKWT
IRARVTNKSNIRNWSNSRGEGKLFSFEVVDESGEIRITAFNNEVDKYFTLLEQGKVYYIS
KATLKVANKQYSTLKNDYEMTLHAHSSVIPCTDSSDVPVMQCDFVPIGELENRDKDSIVD
IIGVCNSAEDVSRITTKSSREVSKRAISLIDTTGKVVTVTLWGEEAEKFDDSGQPVVAIK
GARLSDFRGISLSALFSSTIMVNPDLPEAFRLRAWYDREGYAVDSQSLTETMSVSVGSKM
NWRTLSDVKNENMGHGEKADYFSCVATIIYMRKENCLYQACPSSDCYKKVIDQQNGFYRC
EKCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGRKAEELGQLRETNEAEFDE
VFQKANFSTHIFKNRVKLETYNDECRVKVTVMEVLPVDHRAYSRRLLSNIQKLSH
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaaattaacacagggggcagttgaagcccttgtcaaaggatcccatgtagag
aacccagtgctgcagttactgaacattcgtcagattgataccacaggtgtgcccaggtac
cgcctcatgatgagtgatggccagcactacttctcttccttcctgatggccacccagttg
aaccatctggcagaagagaatcttcttgtaccacattgtgtttgtttgttaaaaaggatg
accaataacactttgtcagatggccggcacgtggtcattgttctggacatggaggtcttg
aagtcagcagaagaagctgcaggaaagattggaaatcccacctcatattcaacagacggt
aagttgccatctccaaataaggtgtcatcaaccacctcggaaccatcatccacttcagct
gctgaggaacctggaccgtccaacaatagcaaaggatggggaaaaggattttctggaaaa
gctcctgtgaaggcttcaccaatgaagacctttcctatgaaagggtcgccaatgaagacg
tcacccatgaaagcctcacccatgatgacctctcctatgaaagggtcacccatgaagagt
tcaccaatgatgacctctcctatgaaagggtcacccatgaaggcggccaccagttcacca
ggttctgccccaaaagtgatgcctatcgctactctcaacccgtacatcagcaagtggact
atcagagccagggtcacaaacaaatccaatatccgtaactggagtaactccagaggagag
ggcaagctcttctcctttgaggtcgtggatgagagtggtgaaatcaggatcacagccttc
aacaatgaagtggacaaatatttcactctgttggagcaaggcaaggtgtactacatctct
aaggctactctaaaggtcgccaacaaacagtattcgacactgaagaacgactacgagatg
accctccatgctcattcatctgttataccctgtacggacagttcggatgtcccagtaatg
cagtgtgactttgtgcccattggagagctggaaaaccgagacaaagactccatcgttgat
ataattggagtgtgcaacagtgcagaggatgtatcccgtatcaccactaagtccagccgg
gaagtctccaagagggccatcagcctaatagacaccactggcaaagtggtgacagtcaca
ctgtggggagaagaggcggagaagtttgatgactccggacagcctgttgttgccatcaaa
ggagctcgcttgtctgattttcggggcatatctctctcagctttgttcagttctacaatc
atggtcaacccagatttacccgaagccttcagactcagggcctggtatgaccgggaaggt
tatgcagttgacagccagtcactaacagaaaccatgtcagtcagtgtgggatcaaagatg
aactggagaacgctgagtgatgttaagaatgaaaacatgggacatggagaaaaggcagac
tattttagctgcgtggcaactataatatacatgcgtaaagaaaattgtttgtatcaagcc
tgtccgtcttcagactgctacaagaaggtcatagatcaacagaatggtttttaccgctgc
gagaagtgcaacagagagttccccaacttcaaatatagactcctactttcagctaacttg
gcagacttcggggataaccagtgggtgacatgcttccaggagacagctgaggtcctgctg
ggtcgcaaggcagaagagctgggacagctcagagaaacaaacgaggcagagtttgatgaa
gtcttccagaaagccaacttctctacccacatatttaagaaccgagtcaagctggagaca
tataatgacgagtgtcgggtgaaagtgaccgtaatggaagtacttcctgtcgaccacaga
gcgtacagcagaagactcctcagtaacattcaaaaattgtctcactga
DBGET
integrated database retrieval system
