Poeciliopsis prolifica (blackstripe livebearer): 129373638
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Entry
129373638 CDS
T09758
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG8-like
KO
K18734
protein SMG8
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129373638
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129373638
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
129373638
NCBI-ProteinID:
XP_054907649
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MKEANMAPPVDLGALLRAEPPGDASHREAGLCVVGVFGKSGAQTGALKETLINTLADKHI
FSLFGSEEGDSSDSYVQALYDQENRVLYLLLSSVCDSRQLLRACRSLSAGISHADAHDVW
KGLERQHCLHLLYMFSVCHVLLLVHPSQTFDVTYDRLFRGLDALRQKVLPLIRAAIKDCA
VSKEWKLNCRPCPPRLLFVFQINASLKVPGNGSDSGGNPEKPKKHSPRRRLQHALEDQIY
RIFRKSRVTNQSSNCLFTVPANQAFVYVIPAADQDPVGALLGQLRSNCVLSDQDSAPVLT
GPRRYQQKRRSARQPSSRESGXSDGSQLVDCSLKEFLWQHVELVLTKKGFDDSVGRNPQP
SHFELPTFTKWVQLASRLYQVLIINTDEELAELATKVQSQVKVLDGFLDADTKFSENRCQ
KALPLAHSAYQSNLPHNYTTTVHKNQLAQALRVYSQHARGVAFQRYAVQLHEDCYKFWSN
GHQLCEERSLTDQHCVHKFHLLPQPGEKPDLDHNPPIMNHNSRGRSTSACNCGRKQAPRD
DPFDIQAANHDFYQLVSSVVLRSWEEKCCGKLERIGFPVFQPSTPDPAPASDRAQRPPSE
TSGDGEQPKEASAAHSHTPGDASLSLALSLGQSTDSLGXYADADPSDGPVQPKRPSLVDR
QPSTVEYLPGMTHSACPKGLLPKFSSWSLLKLGPAKSYNCHTGLEQPGFLPGSSFLLPWD
LVIRSRSEEDAGPXEPLDGGTASWPAPNKNPVGKRGGAGPGRSRRRDDAARAFVGFEYED
GRGRRFISSGPDKIVKALGPGGAKDPASRVLNADMPLYVPSPAQGRGLKPHYAQLTRLFV
VVPDAPLEITLNPQVQPGPPPCPIXHPEQTEVTLPNDGFWVLRFPYSYATERGPCFPPKE
NQPLSNYKVLRGVLRASTANPPQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggcgaacatggctcctccggtggacctcggggctctgcttcgggcggagccg
ccgggggacgcttctcaccgggaggccgggctgtgtgtggtcggtgtgttcggaaagagc
ggcgcccagaccggggctctgaaggagacgctcatcaacacgctggcggacaaacacatc
ttctctctgttcgggtcggaggagggcgactcgtcggacagctacgtccaggctctctac
gaccaggagaaccgagtcctgtacctgctgctgtcctccgtctgcgacagccggcagctg
ctgcgggcctgtcggtccctgagcgccgggatcagccacgccgacgcccacgacgtgtgg
aagggcctggagcgccagcactgcctgcacctgctctacatgttctccgtgtgccacgtc
ctgctgctggtccaccccagccagaccttcgatgtgacctacgaccggctgttccggggc
ctggacgccctgcggcagaaggtcctgcccctgatccgggccgccatcaaggactgcgcg
gtgtccaaggagtggaagctgaactgcaggccgtgtcctccgcggctgctgttcgtcttc
cagatcaatgcgagcctgaaggtccctgggaacggctcggactctggaggaaaccccgaa
aagcccaagaagcattccccgaggaggcgtctgcagcacgctctggaggaccagatctac
cggatcttccgtaaaagccgcgtcaccaaccaaagcagcaactgtctgttcacggtgccc
gccaaccaggccttcgtctatgtgatcccggcagcagatcaggaccccgtgggcgctttg
ctcggccagctgcggtccaactgcgtcttgtcggatcaggactccgccccggtcctcact
gggccgagaaggtaccagcaaaagcgtaggtcagctcggcagcccagcagcagggagtct
ggcnngtccgatggaagccagctggtggactgcagcctgaaggaattcctctggcagcac
gtcgagctggttctgaccaagaagggcttcgacgacagcgtcggccgcaacccccaacct
tcccactttgagctgccgaccttcaccaagtgggtccagttggcttcccgcctctaccag
gtcctgatcatcaacactgacgaggagctggccgagctagccactaaggtgcaaagccag
gtgaaggtcttggatggtttcctggatgccgacacaaagttctcagaaaaccggtgtcag
aaagctctgcctctggcccacagcgcctaccagtccaacctccctcacaactacaccacc
acggtccacaagaaccagctggcacaggcgttgcgggtgtacagccagcacgcgaggggc
gtggccttccaacgctatgcggtgcagcttcatgaagactgctacaagttctggagcaac
ggccaccagctgtgcgaggagcgcagcctgacagaccaacactgcgtgcacaagttccac
ctgctgcctcagccaggtgagaagccagacctggaccacaacccgcccatcatgaaccac
aacagcagggggcgctccaccagtgcctgtaactgcggcaggaagcaggcgcctcgagac
gatccgtttgacatccaggctgccaaccacgacttctaccagttggtctcttctgtcgtg
ctcagatcctgggaggagaaatgttgcgggaagctggagcggatcggcttcccggtcttc
caacccagcactccggacccggcgccagcctcagaccgggcgcagcgtccgccgtcagag
acgtcgggcgacggggagcagccgaaggaggcgagcgcggctcacagccacacgcccggc
gacgccagcctcagcctggcgctcagcctgggccagtccaccgacagcctggggnngtac
gcggacgcagatccgtccgacggcccggtccagcccaagaggccgagcctcgtggaccgc
cagccgtccaccgtggagtacctgccaggaatgacacactccgcctgtcccaaaggtctc
ctcccaaagttctccagctggtctctactcaaactgggaccagcaaagtcctacaactgc
cacactggtctggagcagccgggcttcctgccgggctcctctttcctgctgccgtgggac
ttggtgatccgctcccgctcggaggaggacgctggccccnnggagcctctagacggaggg
acggcgtcctggccggcgcccaacaagaacccggtggggaagcgcggcggcgccgggccg
ggccggagccgccggagggatgacgcggcgcgggccttcgtggggttcgagtacgaagac
ggccggggccgccgcttcatcagcagcggacccgacaaaatcgtaaaggcgctggggccg
ggcggcgccaaggatccagccagcagggtcctgaacgccgacatgccgctctacgtcccg
tcgcccgctcagggccgcggcctgaagccgcactacgctcagctgactcggcttttcgtg
gtggtgcctgacgcgccgctggagatcaccctgaacccccaggtgcagcccggccctcct
ccctgcccaatcnttcaccctgagcagacggaagtgacgctgcccaacgacggcttctgg
gttctgcgctttccgtattcctacgccaccgagcgcggtccctgcttccccccgaaggag
aaccagcctctgagtaactacaaggtgctgcgaggcgtcctgcgggccagcacagccaac
ccgccgcagtga
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