KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129373779
Entry
129373779         CDS       T09758                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
  KO
K13175  THO complex subunit 6
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013  Nucleocytoplasmic transport
pprl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129373779 (thoc6)
  09122 Translation
   03013 Nucleocytoplasmic transport
    129373779 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pprl03019]
    129373779 (thoc6)
   03041 Spliceosome [BR:pprl03041]
    129373779 (thoc6)
Messenger RNA biogenesis [BR:pprl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     129373779 (thoc6)
Spliceosome [BR:pprl03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129373779 (thoc6)
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_WDHD1_1st WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_2nd Beta-prop_NOL10_N Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WDR55 Beta-prop_EML Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_CAF1B_HIR1 DSE1_N Beta-prop_ACSF4 TRM82_WD Beta-prop_VPS8 CFAP251_N Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_WDR90_POC16_2nd Beta-prop_IP5PC_F Beta-prop_HPS5 ASA1 Beta-prop_DCAF4 Beta-prop_TEP1_C WDR54 WD40_RFWD3 Beta-prop_SPT8 WD40_like PAC11
Other DBs
NCBI-GeneID: 129373779
NCBI-ProteinID: XP_054907839
LinkDB
Position
Unknown
AA seq 340 aa
MFDPFQLALTNVSLPWHRLCPQLLHMSVFSQSFSPCGRFLAAGNNYGEIALFSLAAALSP
DATTANQKPVLTFTAHEGPVFSLLSTDSVLLSAGNGEVSAWNWTELIKKNVKPLWTKRPN
YKSSLEIPEINSMAINPRDDSLAIGAGDNNVHILDLEHGAFKATLQGHTDYVHCVCVRER
EAELLSGSEDGAVRMWDCRTGQSVHCIEVHKYESCARPQHGKWISCLTTDSDWMLCGGGP
SLSMWHLRSLSPTSVFPLSGCQRQAAFHQDMILAVGDGAFVSHCLLGGEVKGQIPCTPPS
LNTLKLNTKSSEHRVLTVGGGSSKIDVFTNLSYRAFSLSF
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgtttgaccctttccagctggctttaactaacgtctcgttgccatggcatcgtctctgt
cctcagctcctccacatgtcggttttttcccaaagcttttctccctgcggccgcttcctg
gcggctgggaacaactacggggagatcgcccttttcagcctggctgcggctctcagtcca
gacgccacgacggccaatcagaagcctgttctgacattcacagctcatgaaggtcccgtc
ttcagtctgctgtccacagactctgtcctgctgagcgcagggaacggcgaggtcagcgcc
tggaactggaccgaactcatcaagaagaacgtgaagccgctgtggacgaagaggccgaac
tacaagtccagtctggagattccagagatcaactccatggccatcaaccctcgagacgac
agcctggcgatcggagcgggagacaacaacgtccacatcctggacctggagcacggcgcc
tttaaggcgaccctgcagggtcacacagactatgtgcactgcgtgtgcgtacgtgagcgg
gaggcggagctcctgtctggcagcgaggacggcgccgtgcggatgtgggactgcaggacg
gggcagagcgtccactgcatcgaggtgcataagtacgagagctgcgccaggcctcagcac
gggaagtggatcagctgcctgaccacggactctgattggatgctgtgcggcggcggcccg
tctctgtccatgtggcatctgcgctcgctgtcgccgacctcggtgttccctctgagcggc
tgccagcgccaggccgcgttccaccaggacatgatactcgctgtgggcgacggtgccttt
gtctcccactgccttctgggaggagaggtcaaaggtcagatcccgtgtacgccaccaagc
ctcaacacgctgaagctgaacacaaagagctccgagcaccgggtgctgacggtcggcggc
ggcagcagcaagatcgacgtcttcaccaacctgtcctacagagccttctccctcagcttc
tga

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