Poeciliopsis prolifica (blackstripe livebearer): 129374228
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Entry
129374228 CDS
T09758
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129374228 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129374228 (mtrex)
03041 Spliceosome [BR:
pprl03041
]
129374228 (mtrex)
03009 Ribosome biogenesis [BR:
pprl03009
]
129374228 (mtrex)
03016 Transfer RNA biogenesis [BR:
pprl03016
]
129374228 (mtrex)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129374228 (mtrex)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129374228 (mtrex)
Spliceosome [BR:
pprl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129374228 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
129374228 (mtrex)
Ribosome biogenesis [BR:
pprl03009
]
Eukaryotic type
Pre-60S particles
Helicases
129374228 (mtrex)
Transfer RNA biogenesis [BR:
pprl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129374228 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
129374228
NCBI-ProteinID:
XP_054908506
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADPFGDGLFSVFDDEQQGSAGKKNPTSASTETGKSSGKSGADRDAGPSVRVKREADSDG
GEEVVFGKKPRHDAVSSSDLNLAEFVPQVKVEQVETVEGCSHEVALPAEEEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGESGGGSGGGKWDRNRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFN
NAVDCLSEEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMNP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEEQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DTDFGWGVVVNFSKKTNTKACGDSEPLYVVEVLLHCSKESAKNSATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPYDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYTHTLHSDPNLESVYSLCERKAQIATEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSVEQAT
SLLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWANGATFAQICKMTDIFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccttttggagacggactgttcagcgtgtttgacgatgaacaacaaggttct
gctggcaaaaagaatcccacgagtgcctcaacagagaccggaaaatcttcaggtaaaagc
ggtgctgaccgggatgcaggcccgtctgttcgggtcaagagggaggcggacagtgacggc
ggagaggaggtggtgtttgggaagaaacctcgtcatgatgcagtgtcgtccagtgaccta
aatcttgcagaatttgtgcctcaagtgaaggtggaacaggtggaaaccgtggaaggatgc
tcacatgaggttgctctgccagctgaagaggagtataaacctctgaaaccaagagtggga
aaagcagctaaggaatacccattcgtactggatcccttccagcgtgaggctatcctctgt
atcgacaacaaccagtctgtgctcgtatctgcacacacctctgcaggaaagactgtctgt
gcagaatatgccatcgctctggctcttagagagaagcagagagtcatcttcaccagtcct
attaaggcactttctaaccagaagtacagagagatgtatgaagagttccaggatgtcgga
ttgatgactggtgatgttaccatcaatcctactgcttcctgccttgtcatgacaacagag
attctgaggagcatgctgtatcggggatctgagatcatgagggaggtagcctgggttatc
tttgatgagatccattacatgagagatgcagagcgtggtgtggtttgggaggaaaccatc
atccttcttcctgataatgtgcattatgtattcctgtctgcaaccatcccgaatgccaaa
cagtttgctgagtggatctgtcatctacacaagcagccttgccatgtggtttatacagac
taccggcccactccactgcaacattatatttttccagcagggggcgatggactccaccta
gtggttgatgagaatggggacttcagagaagataatttcaacacagccatgcaggttctc
agagatgctggggagtccgggggaggcagtggaggtggcaagtgggatcgaaaccgaaag
ggaggcacaaagggaccatccagtgttttcaagatagtgaagatgatcatggagaggaac
ttccagccagtgatcattttcagcttcagtaagaaagactgtgaggcctacgccctgcag
gtgtccaaactggattttaacaatgatgatgagaaacgtctggttgaagaagtgttcaac
aatgcagtggactgtctttcagaagaggacaagaagctgcctcaggtcgagcatgtgctg
ccactcttaaagagagggataggaatccatcatggaggactgctgcccatcctgaaagag
actattgagattctcttctctgagggtctgctcaaggccttgtttgcgacagagaccttc
gccatggggattaacatgccagctcggaccgttctcttcacaagtgcacgcaaatttgat
ggcaagaaccaccgctttattacatcaggtgagtacatccagatgtcggggcgtgctggc
aggagaggaatggatgacagaggaatagttatttttatggtggatgagaagatgaatcca
gctgtgggcaaacagctactgaagggctcagcagaccctttgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtagaagagatcaacccagagtacatgctg
gagaagtccttctaccagtttcagcactacagagctttgcctggcgttgttgagaaaatt
aagaagttagaggagcagtatcacaccattgagattcctaacgaggagagtgttgttaca
tattttaagatcaggcagcagctggctaagctgggtaaagagatacaagaattcatccac
aagcccaaatactgcctgcccttcctccagccgggccgacttgtgaaggtgaaaaacgag
gacactgactttggctggggagtagttgtgaactttagcaagaaaacaaacacaaaggcc
tgtggagactctgagccgctgtacgtagtcgaggttttgcttcattgtagtaaagaaagt
gcaaaaaactctgcaactgaagcggccaagcctgctgctccaggggagaccggagagatg
caggtggttccagtgatgctccacctcctcacttcgatcagctcagttcgtctttacatc
cctaaagatctcaggccttatgacaacagacagctcatgctcaagtccatacaggaggtg
cagaagcggttcccggacggcgttcctttacttgaccccatcgacgatatgggcatcaaa
gaccctggcctgaagaaggtcattcagaaggtggaggcctttgaacaccggatgtacaca
catacactccacagtgaccccaacttagaatccgtctactccctgtgtgagaggaaagcc
cagatcgcaaccgaggttcgaaccgccaaacgggagctgaaaaaggctcgcaccgtcctg
cagatggacgagctgaagtgccgaaagagagtcctccgaagactcggcttcgccagcccc
tctgatgtcatcgagatgaaaggcagggtcgcctgtgaaatcagcagtgccgatgagctc
ctgctgacagagatggtgtttaacggcctcttcaacgacctgtcggtggaacaagccacc
tctctcctgtcctgcttcgtcttccaggagaacgccaacgagatgccaaagctaactgag
cagctggccgcgccgctcagacaaatgcaggagtgtgcaaagcgcatcgccaaagtgtct
gcagatgccaagctggaggtcgatgaggagacttacctaaaccagttcaaacctcacttg
atggatgtggtgttcgcctgggccaacggggccacgttcgctcagatctgcaagatgacg
gacatctttgaaggaagcatcattcgctgcatgcgccgcctggaggaggtgctgcggcag
atgtgctctgcagctaaagccatcggtaacactgaactggagaacaagtttgcagaaggc
atcacaaagatcaagagagacatagttttcgctgccagtctctatttatag
DBGET
integrated database retrieval system
