Poeciliopsis prolifica (blackstripe livebearer): 129374254
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Entry
129374254 CDS
T09758
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129374254 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129374254 (nup54)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129374254 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
129374254
NCBI-ProteinID:
XP_054908548
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MAFSFGGAATNTGAGTSGFSFGQFGAKTTASTFGFNPTATTTTASSGFGTLTAPAFGAAT
TTAAPATGFSFGASNTGFGGLGAGSTTAGGFSFGGFGLNANPAAISLNAGCFGTAITTGS
VFNFGNSLASTGAFGGFGTTTTTAAAPGSTFNFAPSNTTGSLFGNTQNKGFGFPSGLGTG
ATTGATGFGTGLGTTGLGFGGFNIQPTQQQQGGLFGQPAQQQGQAQPTQLYQQVTALSAP
TLLGDERDSILAKWNQLQAYWGTGKGYYVNNNLPVDFTQENPFCRFKAVGYSCVPVSKDE
DGLVVLVLNKKEPDVRAQQQQLVESLHKVLGSNQTISVNVEGVKALPNDQSEVIIYVVER
SPNGTSKRIPASTLFTFLEQANIKAQLSQIGVLMSVTRTELSPAQLKQLLQNAPAGVDPI
IWEQAKVDNPDPEKLIPVPMVGFKELLHRLQIQEQMTKQHQTRVDIISNDISELQKNQAT
TVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAPTQF
KGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIKQHLKQQQEGLSHLISVIKDDLED
IKLIEHGLSDGGHIRGGILS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggtgccgcgactaacacaggggcagggacatccgggttttca
tttggtcagtttggggccaaaaccacggcttcgacgtttggttttaaccccacagcgacc
actaccaccgcttcttcagggtttggcactctgacggctcctgcttttggcgcagccacg
actacagctgcaccagccacgggatttagttttggtgcttccaacacaggatttgggggg
cttggagctggaagcaccacagctggtgggtttagctttggggggtttggtttaaatgca
aacccagcagcaatcagcctcaatgcaggttgcttcggtacagcaatcacaactggctct
gttttcaattttggtaatagcctggctagcacaggtgcgtttggtggctttgggacaact
acgacaactgctgctgcaccaggatccactttcaactttgccccctccaacacaacagga
agcttgtttggtaacacacagaacaaagggtttggattcccatctggactcggaactggt
gccactactggagcgacgggctttggaactggattaggaacaactggccttggttttgga
ggttttaatatccagccgacacaacagcagcaaggaggcttgtttggccagccggcccag
cagcagggtcaagctcagccaacccagctttatcagcaagtgaccgctctctcagccccc
actctgctgggagacgaacgggactccatacttgccaaatggaaccagttgcaggcctac
tggggaacagggaagggctactatgttaacaacaacctaccagtggactttactcaggag
aaccctttctgcaggttcaaggcagtggggtacagctgtgtcccggtaagcaaggacgaa
gatggtttagtggtgttggttctgaataaaaaggaacctgatgttcgtgctcagcagcag
cagctggttgagtcactgcacaaggttctgggaagcaaccagactattagcgtcaatgta
gagggtgttaaagctctgcccaacgatcagtcagaggtgatcatttatgtggtggagcgt
tcccccaatggcacctccaagaggatcccagcttccacactcttcaccttcctggagcag
gccaacatcaaggctcagctctcccagattggagtgctcatgtcagtaacacgcacagag
ctgtccccagcacagctgaagcagctgctgcaaaatgctcctgcaggtgtggatcccatc
atttgggaacaagctaaggtggacaaccctgacccagagaagttaatcccagtacccatg
gtgggtttcaaggagctgctccacagattgcagatccaggagcagatgaccaagcaacac
cagaccagagtggatataatctccaatgacatcagtgagctgcagaagaaccaggcaaca
actgtagccaagatcgctcaatacaagaggaagctgatggatctgtctcacagggtgctg
caggtactaataaagcaggagattcagagaaaaagcggctacgctatccaagtggatgag
gagcatctgagggtgcagctggacaccattcagtcagaactcaatgcacccacacagttc
aagggtcgattgaatgagctgatgtctcaaattcgaatgcagaaccactttggagccgtg
agatcagaagagcggtacaacgtcgacgcagatctcctccgagaaatcaaacaacactta
aagcagcaacaagaaggtttaagtcacctgatcagcgtcattaaagatgacttggaggac
atcaaactcatagaacatggactaagcgacggcggccacatcagagggggcatcctgagc
tga
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