Poeciliopsis prolifica (blackstripe livebearer): 129374429
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Entry
129374429 CDS
T09758
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03015
mRNA surveillance pathway
pprl04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129374429
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129374429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129374429
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129374429
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129374429
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129374429
U7-dependent histone pre-mRNA processing factors
129374429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Cnd1
PDS5
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
129374429
NCBI-ProteinID:
XP_054908810
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MELPSDDGEPPAVLDVTTSEKVVELLNQAALIPTDEKLTVLKQVQELIINKDPSLLDNFL
DEIIAFQTDRSMEVRKFVIGFIEEACKRDNELLLRLIANLNLLLKDDSVNVVKKAILSLT
QLYKVALQWLVRSRSVSEMQEACWDLVSQMTGDVLSMLDSENDGVRTHAIKFTESLIVTL
SPRTPESDVPKRQEGDISLDKVPRDHPYIRYDALCEEGKAALDKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLKHPCS
LEFQVQIGTLLLDLGMPQSEISRNTPPPREQRKRPRYEPAAEGKKVKMEPALIEDDEDKE
EPVPLAAPKPAAAPPQSAIDLTAEFLRPLTPEKRRQLVLISMVYLPDVMPASFQATYTPV
ESAGTDAQIKLARLMATRXDGGGIGPGLEQCKAREDESGKEEPAEDESGGKDVLIRRSLS
SMVGQAISVVGGYSEKPPAPEAPAVKRLPEPILPSVQTKMAGAGGRKKVFRLADVVQPLS
DSQIGSLSSRAVKRILHSEKAVTQSGMSHVRVKLLSRLVTQFEGVMKEDVLDYVLEDMRC
RSDLAFSLLYQEYNSYLSQLPAGLLDGYDHCLYTLLSGLQEKPEQRDGLFTKLVLEAPII
TESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHDKEKVRSTALA
FLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCLFLY
LSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKGAET
LVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKLIKLN
PIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLCFGEKN
VYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKYPKV
WEGFVKCCQRTKPQSYSVLLQLPPLQLASVFERCPEMRAPLLQHVLSFTPHQQAHIPTSV
MAVLEAHKKPDPAPAEPVLEEEPAEPTVVQQPGPEPGPGPTLQQETVLLRDEEEPMEQEE
AGPPTPETTDPVHQEEDPKVAEEPEPEQGQEPLEETMEEPEAEPSDQSEPLTVPEPEAPP
AAGSGSEDAE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggagcttccttcagatgacggggagccgcctgctgtcctcgacgtcaccaccagcgag
aaggtggtggagctgctgaaccaggcggctctcatccccacagatgaaaagctcactgtt
ctcaaacaggttcaggaactcatcatcaacaaggatccgtctcttctggacaacttcctg
gatgagatcattgccttccagacggaccggtccatggaagtcaggaagtttgtgatcggg
ttcatcgaggaagcctgcaaacgggacaacgagcttctgctgcggctcatcgccaacctg
aacctgctgctgaaggacgacagcgtcaacgtggtgaagaaggccatcctgtccctgacg
cagctctacaaggtcgccctgcagtggctggtccggtcccggtcggtgtcggagatgcag
gaggcctgctgggacttggtgtcccagatgaccggagacgttctgagcatgctcgactcg
gagaacgacggcgtccggacgcacgccatcaagttcaccgagtcgctgatcgtcacactg
tcgccgcggacgcccgagtccgacgtccccaagagacaggaaggagacatcagcctggac
aaggtccccagggaccacccctacatccgctacgacgctctgtgcgaggaggggaaggcg
gcgctggacaagctgctgaagttcatggttcacccggcaatttccagcatcaacctgaca
accgcgctcggctccctagctaccatcgcgaggcaacgcccgatgttcatgtccgaggtg
gtgcaggcctacgagacgctgcacgccaacctgccccccaccctggccaagtcccaggtg
agcagcgtgaggaagaacctgaagctgcacctggtgtcggttctgaagcatccgtgcagc
ctggagttccaggtccagatcgggacgctgctgctggacctgggcatgccgcagagcgag
atcagccgcaacacgccgccgccgcgcgagcagaggaagcgtccgcgctacgagcccgcc
gccgagggcaagaaggtcaagatggaaccggcgctcatcgaagacgacgaggacaaagag
gagccggtaccgctcgctgccccgaagccggcggccgcccctccgcagtcagccatcgac
ctcacggccgaattcctgcgacccctgaccccggagaaacgtcgccaactggtgctcatc
agcatggtgtacctgccggacgtcatgccggcgtccttccaggccacctacacaccggtg
gagtcggccggaaccgacgcccagatcaaactggcccggctgatggcgaccaganntgac
ggcggcgggatcggaccaggtctggagcagtgcaaggcgcgggaggacgagtcggggaag
gaggagccggcggaggacgagtcgggggggaaggacgtcctgatcagacggtcgctgtcc
tccatggtgggccaggccatctccgtggtgggcggctacagcgagaagccgcctgccccc
gaggcgcccgccgtcaagaggcttcctgagcccatcctgccctccgtccagaccaagatg
gctggcgccggcggcaggaagaaggtgttccgcctggcggacgtggtccagccgctgtcc
gactcgcagatcggatcgctgtcctccagagccgtgaagcgcatcctgcactcggagaag
gcggtcacccagagcggcatgtcccacgtcagggtgaagctgctgtcccggctggtgacc
cagttcgagggcgtgatgaaggaggacgtcctggactacgtcctggaggacatgcgatgc
cgtagcgacctggccttctctctgctgtaccaggagtacaacagctacctgagccagctg
ccggcaggcctgctggacggatacgaccactgcctctacacgctgctgtccgggctgcag
gagaaacccgagcagagggacgggctcttcaccaagctggttctggaggctcccatcatc
accgagtcggcgctggaggtgatccgccgctactgtgaggacgagtcccgggtttatctg
ggcatgacgacgctgaaggagctgatcgtcaagaggccgtccaggcagttccagtacctc
catgttctgttggacctcagctcccacgacaaagagaaggtgcgcagcaccgccctggcc
ttcctgaagcggatgtatgagaaggaccacctgagggactacatcgagaagtttgccctg
aactacctgcagctcctggttcaccccaacccgccctcactgctgttcggcgccgataag
gacacggaggttgctgctccgtggacggaggagacggtgagacagtgtctcttcctctac
ctgtccctccttccgctgaaccaccggctggtccatgagctggcgtccgtctacaccgag
gccatcgccgacatcaagcgcagcgtgctgcgcgccatcgagcagccgatccgcgggatg
gggatgaactctccagagctgctgcttctggttgaaaactgtcctaaaggggcggagact
ctggtcactcgctgcctgcacattttgaccgataaagtgcctccatcgccggagctggtg
gagcgggtccgggacctctaccacaagcgcgttccggacgttcgcttcctgatcccggtc
atcaacggcctggagaagaatgaagtcatccaggctctgccgaagctcatcaagctcaac
cccatcgtcgtgaaggaagtcttcaaccggctgctgggaactcagcacagtgagggaagc
tcttcggtttctccactgactccaggagatctgctcatcgccttgcacaacatcgactca
acaaagtgcgacatgaaatccatcatcaaagccaccaacctgtgcttcggggagaagaac
gtctatacgtcggaggtgctggcggtggtgatgcagcagctgatggagcagaacccgctg
cccatgctgctgatgcgcaccgtcatccagtccctcactatgtacccgcgcctgggcggc
ttcgtcatgaacatcctgtcccgcctcatcgtcaagcaggtgtggaagtaccccaaggtg
tgggagggcttcgtgaagtgctgccagcggaccaagccgcagtcctacagcgttctgctg
cagctgccgccgctgcagctggccagcgtgtttgagcgctgcccggagatgagggcgccg
ctgctgcagcacgtcctgtccttcacgccgcatcagcaagctcacatcccgacctccgtc
atggcggtgctggaggcccacaagaagcccgacccggcgccagcggagccggttctggag
gaggaaccggcagaaccaactgtcgtacagcaaccaggaccagaaccaggaccaggacca
acgctacagcaggaaaccgttctgctgagggatgaagaggaaccgatggaacaggaagag
gcggggccaccgacaccagagaccaccgacccggttcaccaggaagaagatccgaaagtc
gcagaggaaccagaaccagaacaaggccaggagccattggaggaaacaatggaggagccc
gaggccgagccatcggatcagtcggaaccgctcacggttccagaaccggaggcgccgcct
gcagctggaagcgggtcggaagacgcagagtag
DBGET
integrated database retrieval system
