Poeciliopsis prolifica (blackstripe livebearer): 129374445
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Entry
129374445 CDS
T09758
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprl04147
]
129374445 (col18a1a)
00535 Proteoglycans [BR:
pprl00535
]
129374445 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129374445 (col18a1a)
Exosome [BR:
pprl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129374445 (col18a1a)
Proteoglycans [BR:
pprl00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
129374445 (col18a1a)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129374445 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
129374445
NCBI-ProteinID:
XP_054908843
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MRSWFRALPLLTLWVVYSEAWFWSWSETGTTLAPRLELEGSGIATGSGEPPSESSTAAGA
EIIDEGHVLQTVGQTWDETTEGPRVTTVVPSTLPDRGRGVGQATAGITSRRSKPEDSGVS
LLQLIGDPPPEKIQEVDGPDNSPAYLFGPDSATGQLARAHFPNPFYRNFALIFSLKPTSD
DGGIVFSITDSSQQIIHVGVKLSAVQGSEQNVILFYSEADAPQSKEAARFRVPSMTNTWN
RFAVAVKDDKAMLYLNCDVEPQVMRMERSYWQLELQSGSGVFVGQAGGEHPDKFKGAISE
LRVVGDTSVAARFCEEDDDSDMASGEGSGYGETRRPKPFSEKPQQTRADESLPPIQQPPL
ERPGPQPGAAAAKGEKGDRGEKGDRGPTGPKGEPGSGSQGGIRGIKGEPGEKGAKGSAGF
GYPGSKGEPGPPGPPGPPGSPGSASEYSVDRDGSVVLKVPGPRGPPGPAGPQGPAGEDGE
PGDPGEDGKTGPQGPPGFPGTPGDAGVKGQKGDRGEGQPGPRGPPGPPGPPGTGYRSTFE
DMEASGFPDLVSVRGLPGPPGPPGPPGPPGLPSASTSVNTAAFGPPGKDGAPGQPGLPGL
PGADGLPGAPGPRGEKGDSGDLGLPGAIGQKGSLGEPGLPGTPGEPGLAGLPGPMGPVGP
PGPPGPPGPGHRVGFDDMEDSSGIFTNGLPGVRGPEGIQGPPGLPGHPGKPGFPGIEGPK
GEQGLAGRDGLPGLDGFPGPPGQKGDRGDKGETGDPGRDGTGLPGPPGPPGPPGQIIYQP
SDNGVAGLPGRAGFPGPVGPKGDRGDPGSPGYALKGEKGEPGLIIGPDGNPLYLGGLTGS
KGDRGLQGPIGPSGPQGPPGLKGEIGMPGRPGRPGVNGYKGEKGEPGGGAGYGYPGVAGP
PGPPGPPGPPGPALDRFNRFDENSRAYQVVKGEKGERGDRGSPGIPGTASNFDIYAFKNE
LKGDQGDPGVKGEKGEPGGGYYDPRFGGPVGPPGPPGNPGLPGPKGESIAGPAGPPGPSG
PPGVGYDGRPGPAGPPGPPGPPGNPSFSGPYRPNYPVSVPGPPGPPGPPGSPGVSSGVTV
LRSYDIMIATARQQPEGSLIYILDKADLYLRVRDGLRQILLGDYRTFFGDLGNEVAEVQP
PPVVVYPHAPDRTSTNGAGHYSQSSVVIRPVEPALRQPSPPVVPAADSSEPALHLVALNA
PQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRNGFPIMNLKNQ
VLFSSWESIFSEDSNKMRENVPLYSFDGRDILRDSAWPEKMVWHGSSKKGHRQMDHYCET
WRAGERAVTGLASSLQSGRLLQQTPSSCSGSYIVLCIENAFTSPSK
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctggttcagagctttgccccttctgaccctgtgggtggtctactccgaggct
tggttctggtcctggagtgagaccggcacaacgttggcgcccaggttggaactggagggt
tctggcattgcgacaggtagcggcgagcctccatctgagagcagcaccgcagctggagca
gagatcattgatgaaggacacgtgctccaaacagttgggcagacttgggatgagaccact
gaaggtcctcgagtgacgactgtagttccttcaacgctaccagacagggggcgtggagtg
ggacaagccaccgcagggataacatcacgcaggagtaaacccgaagacagcggcgtgtcg
ctgctgcagctgattggcgatcctcctccagagaagatccaggaggtggatggcccggac
aacagccccgcctacctgttcggcccagactccgccacgggccagctggcccgcgcccac
ttccccaaccccttctacaggaacttcgctctcatcttcagcctgaagcccacatccgat
gacggcggcatcgtcttctccatcaccgactcttcgcagcagatcattcacgttggcgtc
aagctgtcggctgttcagggatcggagcaaaacgtcattttgttctacagcgaggccgac
gccccacagtccaaagaggcggccaggttccgcgtgccgtccatgacgaacacctggaac
cgcttcgcggtggctgtaaaggacgacaaggccatgctgtacctgaactgtgacgtggag
ccgcaggtgatgcggatggagcgatcatattggcagctggagctgcagtcggggtctggg
gtgtttgtgggccaggctggaggggagcatcctgacaaatttaagggtgccatcagcgag
ctgcgggtggtgggagacaccagcgtcgcagcgcggttctgcgaggaggatgacgactcc
gatatggcttcaggagaaggaagtggctacggagaaaccagacggccaaaacctttcagt
gagaaacctcaacagacgagagccgatgaatctcttcctccaatccaacagccgccgctg
gagaggcccgggccacaacccggtgcagccgctgctaaaggagagaaaggcgacagagga
gagaaaggagaccggggcccgacggggccgaagggagagccaggctccggctcccaaggg
ggaatccgcggaataaagggagaaccaggtgaaaaaggagccaagggcagtgcaggtttt
gggtatccgggctcaaagggtgaaccaggccctcccggaccaccagggccccctggatct
ccaggatctgcaagcgagtattcagttgaccgagatgggtcggttgttttgaaggttcct
gggccgcgtggaccgcctggaccggcaggtcctcaggggccagcaggggaagatggagaa
ccaggtgatcccggtgaagatggaaaaactgggcctcagggacctccagggtttccagga
actccgggtgacgcaggagttaaaggacagaagggcgaccgtggagagggccagcccggc
cccagaggacccccggggcctccaggaccaccgggtacaggatacagatctacattcgag
gacatggaggcctctggattccctgatttggtctccgttcggggacttccaggtccccca
ggtcctcctggtcccccaggccctcccggtcttccctcagcaagcacgtccgtgaacact
gccgcttttggacctccaggaaaagatggagcacctggccaacctggtctgcctggttta
cctggtgccgatggtcttccaggagctcctggccccaggggagaaaagggggattcaggc
gatcttggactcccaggagcaattggacaaaagggatctctaggagaacctggtttaccg
ggaactccaggagagcctggactggctggtctgccaggacccatgggaccagtcggtcct
cctggacctcctgggcctccaggaccaggtcatcgggttggatttgatgacatggaggac
tccagtgggattttcactaatggacttcctggtgtcagaggaccagaagggatacaggga
cctcctggtttacctggacacccaggtaagcccggtttcccgggtattgagggtccaaag
ggtgagcagggtctggcaggaagagacggactgccaggcctggatggcttcccgggaccg
ccgggacaaaagggtgacagaggtgacaaaggagagacgggcgatccgggtcgagatgga
accggactcccaggcccacctggtccacctggaccaccggggcaaatcatctaccagcca
tctgataacggagtcgctggtttacctggcagagctggatttcctggtcctgttggacca
aagggggacagaggtgaccctggttcacccggttatgccctgaagggtgaaaaaggggaa
ccaggcttgataattggaccagatggaaatcctttgtatctgggaggcctgacaggcagc
aagggagacagaggactgcaaggacctattggaccttctggccctcaggggcctcctgga
ctgaaaggtgaaataggaatgccaggaagaccaggtcgaccaggagtgaatggatacaag
ggtgagaaaggagagccaggaggcggtgcaggttatggctacccgggagttgctggcccg
ccaggacccccaggaccccccggaccaccaggtccagctctggatcgctttaatcgcttt
gatgaaaactccagggcttaccaagtggtaaagggagaaaaaggagagcgtggcgaccgc
ggatctcctgggatcccaggaactgcgtcgaacttcgatatctacgcgtttaagaatgag
ctgaaaggagaccagggagatccgggagtgaagggggagaaaggagagccgggtggcgga
tactacgacccacgttttggaggaccagtgggcccaccaggacctccaggaaacccagga
ttaccaggtccaaagggagagtctatagccgggcctgctgggccaccaggaccttctgga
ccaccaggtgttggctacgatggccgcccaggtccagcaggaccacctggacctccagga
cctcctgggaatccctcattttctggaccatacagacctaattatcccgtcagcgttcct
ggacctcctggcccgccaggcccccctggaagccctggcgtctcctctggggtgacggtg
ttgaggtcatatgacatcatgattgcgacggccaggcagcagccggagggaagtctcatt
tacatcctggacaaagcagacctctatctgagagtgcgcgatggacttcgacaaatccta
ctcggagattacaggaccttctttggagatctgggcaacgaggtggcagaagtgcagccc
ccgccggtggtcgtgtacccccacgccccagaccggacctccaccaacggagcgggtcat
tactcccagagcagcgtggttatccgacccgttgaacccgcgctgcggcagcccagcccc
cccgtggtgccagctgctgactcgtcagaaccagcactccaccttgtagcgctgaacgcg
cctcagaccggaaacatgcgagggattcgcggggcggacttcctgtgcttccagcaggct
cgcgctgttggtctgaagggaacgttcagagccttcctgtcctccaagctccaagacctc
tacaccatcgtccgcaggtcagacaggaacggattccccatcatgaacctgaagaaccaa
gtgttgttcagcagctgggagtccatcttcagtgaggacagcaacaaaatgagggagaat
gtaccgttgtactcgtttgacggcagagacatcctcagggacagtgcatggccagagaag
atggtctggcacggatcgagcaaaaagggccaccggcaaatggatcattactgtgaaacg
tggcgggcgggcgagcgcgccgtgacgggcctggcgtcgtccctgcagagcggccgcctg
ctgcagcagacgcccagcagctgctccggctcctacatcgtcctctgcatcgagaacgcc
ttcacgtcgccctccaaataa
DBGET
integrated database retrieval system
