Poeciliopsis prolifica (blackstripe livebearer): 129374740
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Entry
129374740 CDS
T09758
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprl03036
]
129374740 (dicer1)
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
129374740 (dicer1)
microRNA pathway
RISC loading complex
129374740 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129374740
NCBI-ProteinID:
XP_054909310
LinkDB
All DBs
Position
Unknown
AA seq
1856 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTDSGK
TFIAVLLTKELSHQIRGSYEENAKRTVFLVNSVSSVIQQAAAVRTHSDLQVGEYWKEASA
WSDQRWSQEISTNQVLVMTCHIFLHVLRSKILPLSKINLVVFDDCHLAITEHPYCDIMKL
FEECTCGPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYTSQPRE
VVLDCGPYVDRSGLSSHLQAELDEALLFLNDCNIPFSREDRDPTFISKQILSDCRAVLLV
LGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDLKF
VTPKVLRLLEILHEYKPLERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERPEA
NFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNK
QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR
ARAPVSNYIMLADSERTKSFEEDLTTYKAIEKILRNKCSKSVEAGEFEADQSLDDDNLLP
PYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETGDGRFQSTLFLPIN
SPLRVPVKGPIMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEE
ETNVPGRPGSTKRRQCYPKAIPECLQDSYALPEQTYFLYVIGMVLTTPLPDELNFRRRKL
YPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSSVQLDLITRMHQY
IFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSDTLDMDFMFMEDIEKSEARTGIPTT
KYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYY
KTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQI
LVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATEAGVGVQTLPPDFRYP
NLDFGWKRSIDIKTLCPCPESCSEEVDCKHQNLTFLALPSSHQGPLLAPAQGPCAGNLTN
GTTVTDDGHRDEHLHQHDSCQGCGGSSEWKHDATSVPAQTPLSSSQPSHECTSGRTSHHS
NEATSDCTRTAPSPDLTAGSRAADSPRNLGPNPGLILQALTLSNASDGFNLERLEMLGDS
FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWL
PPGYVVNQDKSSSDRVDSEEAREELVSNGRSGNDFDDEDRDDDGEDVDEDELMLKDEPKD
EVNMEDDLEYYKEHIRFIDNMLLGSGAFGKKISISGFGPPLSPAPGSSPSVDSSYDWKAP
KKPAQHSEQAHCGTAAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTELGKQ
SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPVQRGSRTALL
VPAVLTPAVELMYGWLKIPPRCMLDHPDAERTLQHLISGFENFERKINYTFQNKAYLLQA
FTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFA
SLAVKYDYHKFFKAISPELFHVIDDFVQFQLEKDEMQGMDSELRRSEEDEEKEEDIEVPK
AMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAK
FSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQTN
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgcagctcgtcacccctgctacttcacccatggggcccttctttggtctg
ccgtggcagcaggaggccatccatgacaacatctacacgcccaggaaatatcaggtcgaa
cttctcgaagcagctcttgaacgcaacactatcgtctgcttgaacacagactcagggaag
acatttattgcagtactcctaactaaagagctctcccaccaaatccgagggagctacgag
gaaaatgccaaaaggacagttttcctggtgaattcagtgtcgtctgtaattcagcaagcg
gctgctgtcagaactcactcggacctccaggtgggggagtactggaaggaggcgtcagct
tggtcggatcagagatggagtcaggagatatccacaaatcaggtgctggtgatgacatgc
cacatcttccttcatgttctaaggagcaagatcttacctctgtctaaaatcaacctggtg
gtgttcgatgattgtcacctggcgatcacagagcacccttactgtgacatcatgaagctg
tttgaggaatgcacttgtggaccacgaatactgggcctcactgcttccatcctcaatggg
aagtgtgacccatccgaactggagcagaagattcagaatcttgagagaatcctgaaaagc
aatgctgaaacggcgactgacctggtggtcctcgacaggtacacgtctcagccgagggag
gtggtgttggactgcggcccctacgtggacaggagcggcctttcatcccatttgcaagcg
gagctggatgaagcgctcctcttcctcaacgactgcaacatcccgttttccagagaggac
agagatcccacgttcatctccaaacagatcctaagcgactgccgggccgtgttgctggtt
ctgggtccttggtgtgcagacaaggctgcaggtatcatggtgcgagagctgcagaagtac
atcaaacatgaacaggaggagctcaacagaaagttcctgctcttcaccgacaccatcctg
cggaaggtgcacgctctgtgcgaggagcacttctcccccgcctccctggacctcaagttt
gtcacgccgaaggtgctgcgcttgcttgagatcctgcacgagtacaagccgctggagcgc
cagcagtttgagagtgtggagtggtacaacaaccgcaaccaggacaattatgtgtcgtgg
agcgactcggaggatgaggacgaggatgaggaggtggaggccaaagagaggccagaggcc
aactttccctccccgttcaccaacatcctgtgtgggatcatcttcgtggagcggcgctac
acagctgtcgttctgaaccgtctaatcaaagaggcagggaagcaggacccggagctggct
tacatcagcagcaacttcatcaccggccacagcatcgggaagaaccagccgaggaacaag
cagatggaggtggagttcaggaaacaggaggaggttctcagaaagttcagagctcacgaa
accaacctgctgatcgccaccagcatcgtagaagaaggtgtggatattccaaagtgcaac
cttgtggtccgctttgacctgcctacagagtacaggtcctacgtccagtccaagggccga
gcccgggcccctgtctccaattacatcatgctggccgactctgaaaggaccaagagcttt
gaggaggatctgaccacttacaaggccatcgagaagatcctgaggaataaatgctccaag
tccgtggaggcaggagagtttgaggcagaccagagtctggacgacgataacctcctccct
ccatatgtcctgcggtctgaagacggaggccctcgggtcaccatcaacacggccatcgga
cacatcaacaggtattgcgctcggctgcccagcgacccgttcacacacctcgctcccaaa
tgtaaaactgtggagacgggcgatggacgcttccagtccaccctcttcttacccataaac
tctcctctgagagtccccgtcaagggtcccatcatgaactgcgcccggctggctgagaaa
gctgttgcactgctctgctgtgaaaaactccataaaataggtgagctggatgaccacctg
atgcctgttgggaaagaaacggtgaagtacgaggaggagctagacctccatgatgaggag
gagaccaatgtcccgggtcgacctggctccaccaagaggaggcagtgctaccctaaagcc
atacccgagtgtctgcaggacagctatgccctgccggagcagacctacttcctatatgtg
atcgggatggtccttaccacgccgctgcccgatgagctgaacttccgcaggagaaagctg
tacccccctgaggacacgactcggtgcttcggcatcctgactgccaaacccatacctcga
attcctcatttcccggtgtacacccgctcgggtgaggtgacaatctccatcgaactgcag
aagtcgggcttcacgctcagctctgtccagctggacctcatcactcgcatgcatcagtac
atcttctcccacatcctccgcctggagaaacctgcactggagttcaaacccacgctggct
gactcagcttattgcgttctacctctgaatgttgttggagactccgacactctggatatg
gactttatgttcatggaggacattgagaagtctgaggcccgaacaggcattcctaccact
aagtacaccaagcagaaccccttcatcttcaagctggaggactaccaggatgctgtgatc
attccaaggtatcggaacttcgaccagccacatcgtttctacgtcgctgacgtctacacc
gacctgacgccgctcagcaagttcccatcgccggagtacgagacctttgccgagtattac
aaaacaaaatacaacctggacctgtccaacctgaaccagccgctcctggatgtcgaccac
acctcgtccagactcaacctgttgactccccgacacctgaaccagaaggggaaggctttg
ccactgagcagcgccgagaagaggaaggccaagtgggagagcctgcagaacaaacagatt
ctggttccagagctgtgtgccatccatcccattcccgcctccctttggaggaaagccgtg
tgtctgcccagcatcctgtaccgcctccactgcctgctaacagccgaggagctgcgagcc
cagactgccaccgaagctggagttggggtgcagaccctcccccccgacttcaggtatcca
aacctggactttggctggaagagatccatcgacataaaaacgctctgcccttgtcctgaa
tcctgcagtgaagaagttgattgtaagcaccaaaatctcaccttcttagcacttcccagc
agtcaccaggggcccctcctagcccctgcacaggggccctgcgcggggaacctaactaac
ggcactaccgtgacagacgacggccacagagacgagcaccttcaccaacatgacagttgc
caaggctgcggcggcagctctgaatggaaacacgacgctacctcagttcctgcgcagacg
cccctcagctccagtcagcccagccatgaatgtacctctgggaggacctcacaccacagt
aatgaagctacctcagactgcactcgtacagcaccttcccctgacctcacagccgggtcc
cgggctgcggactcgcccaggaacctgggccccaaccctggcctcatcctgcaggccttg
actctgtccaacgccagcgacggcttcaacctggagcggcttgagatgctcggcgactcc
ttcctgaaacacgccatcaccacctatctgttctgcacctaccccgatgcacacgaaggg
aggctcagctacatgcgcagcaagaaggtgagcaactgtaacctgtaccgtctggggaag
aaaaaagggcttcccagccggatggtggtgtccatctttgaccctccggtcaactggttg
ccgcctggatacgtggtgaaccaggacaagagcagctcagacagagtggactcggaggag
gcgagagaggagctggtatccaatgggcggtctgggaacgacttcgacgacgaggacagg
gacgacgatggtgaagacgtggacgaagacgagctgatgctgaaggacgaaccgaaggac
gaagtcaacatggaggacgacttggaatactacaaggagcacatccgattcatcgacaac
atgctgctggggtccggtgcgttcgggaagaagatctccatcagcggcttcggtccgccg
ctcagcccggccccaggctcctccccctccgtggactcctcctatgattggaaggccccc
aagaagcccgcccagcactctgagcaggcgcactgcggcacggcggctgaggagtttgac
tacagctcgtgggacgccatgtgctacctggaccccagcaaggcgggtgaggaggacgac
ttcgtggtgggattctggaacccgtcggaggagaactgcggcaccgagctcgggaagcag
tccatctcctacgacctgcacacggagcagtgcatcgcagacaagagcatcgccgactgt
gtggaggctctgctgggctgttacctgaccagctgtggagagcgggccgcccagatgttc
ctctgctcgctgggcctcaaggtgctgccggtgcagagggggtctcgcacagcgctgctg
gtaccggccgttctgactccagccgtggagctgatgtacggctggctgaagatcccgccc
cgctgcatgctggaccatcctgacgcagagcgcacgctgcagcacctcatctcggggttc
gagaactttgagaggaaaatcaactacacgtttcagaacaaggcttacctgctgcaggcc
ttcacccacgcctcctaccattacaacaccatcacagattgctaccagcggctggagttt
cttggcgacgctatcttggactacctcataacgaagcacctttacgaagaccctcggcag
cactcgcccggcgtgctgacggacctgcgctcagcgctagtcaacaacaccatcttcgcc
tcgctcgccgtcaaatacgactaccacaagttctttaaggccatctctccagagctgttc
cacgtcatcgacgactttgtgcagttccagctggagaaggacgagatgcagggcatggac
tctgagctgcgacgctccgaagaagacgaagagaaggaggaggacatcgaggtgcccaag
gccatgggggacatctttgagtctctggctggagccatctacatggacagcaggatgtct
ctcgagacggtgtggcaggtctactatccaatgatgaggcctctcatcgagaaattctcc
gctaacgttcctcgctctccagtccgggaactcctggagatggaaccagaaactgccaag
tttagcccagcagagcgaacctacgacgggaaggtgcgcgtgacggtggaagttgttggg
aaggggaagttcaaaggagtgggccgcagctaccggatcgccaagtcggcggcggcccgc
cgagctctgcgcagtctcaaagccaatcaacctcaggtccaaaccaactga
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integrated database retrieval system
