KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129375035
Entry
129375035         CDS       T09758                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129375035 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pprl03041]
    129375035 (snrnp40)
Spliceosome [BR:pprl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    129375035 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    129375035 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 129375035
NCBI-ProteinID: XP_054909797
LinkDB
Position
Unknown
AA seq 347 aa
MIEPLKRAGDMAVVPSAMKRPRMELVAAAQSQQLVAAGPPRTSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCENFATLKGHSGAVMELHYNTDGSLLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPVVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgagcctttgaagagagccggcgacatggcggtggttccctccgccatgaagcgg
ccccggatggagctggtggcggcggcgcagtcccagcagctcgtggccgcgggccctcca
cggacctccagcctgcaggcccccatcatgttgatgtcaggccacgagggcgaggtctac
tgctgcaagtttcaccccaacggagccacgctggcctcctcaggatttgacaggctcata
ctgatgtggaacgtctatggagactgtgaaaacttcgccaccctgaagggccacagtgga
gcagtgatggagctgcattataacacagatggcagcttgttgttctcagcgagcacagac
aaaactgtgggtgtgtgggacagcgagaccggtgagaggatcaagcgtctgaagggccac
acctcttttgttaacacctgctatccagctcgtcgggggccccagctggtgtgcactggc
agtgatgatgggacggtgaagctttgggacatccgcaaaaaaggggccatccacactttt
cagaacacataccaggtgctggccgtgacgtttaatgacaccagtgatcagattctgtct
ggaggcatcgacaatgatatcaaggtgtgggacctgcggcagaacaagctgatctacaac
atgcacggccacggcgactctgtgaccggactcagcctgagctccgagggatcgtacctc
ctgtcgaactccatggacaacacagtgcggatctgggatgtgcgaccgttcgcgcccaag
gaaagatgcgtgaagattttccagggtaacgtgcacaacttcgagaagaatctgctgagg
tgctcttggtccacagacggcagtaagatcgcagcaggttcagctgacagatttgtgtac
atctgggacaccacgtccagaaggatcctgtacaagctgccgggtcacgccggctctgtc
aatgaggtggtcttccacccagaggagccagtcgtgctgtctgggtccagtgataaacgt
ctgtacatgggagaaattcagtag

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