Poeciliopsis prolifica (blackstripe livebearer): 129375787
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Entry
129375787 CDS
T09758
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129375787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129375787
03036 Chromosome and associated proteins [BR:
pprl03036
]
129375787
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129375787
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129375787
mRNA degradation factors
5'-3' decay
Decapping complex
129375787
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129375787
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
MS_TIM-barrel
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
129375787
NCBI-ProteinID:
XP_054911033
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MATPRTENLGPVMMGLNKQNGQLKGQTKPAAGPPASTQGKNPAGSNQDSGGIKFGDDWKK
CLQLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQICIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEADKLLSQ
DFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELTLKGITQFYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRFNLKAIEEQLVTDIKPIPSSIDKSLYVAEYHSGPVTDGDEDDAAEKPPRRQ
DST
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaccccgaacagaaaacctgggtccggtcatgatgggactgaataagcagaac
gggcagctcaaaggacagaccaaacctgccgccggacccccagcatcaactcaaggaaag
aatccagccgggagcaaccaggacagcggaggaatcaagtttggagacgactggaagaaa
tgcctacagctccccccgaaggacaacagggtcaaaacctcagacgtcacggcaaccaag
gggaacgagtttgaagattactgcctgaaaagggaactcctgatgggaatctttgagatg
ggctgggagaaaccgtcgccgatccaggaggagagcattcccatcgcgctgtccgggcgc
gacatcctggcgcgagcaaagaacgggacggggaaaagcggcgcctacctgatcccgctg
ctggagcggatagacctgaagaaggaccacatacaggccatcgtcatggtgcccacgcgg
gagctcgcgctgcagatgagccagatctgcatccagctcagcaaacatctgggcggagtc
aaagtgatggcgacgaccggaggaaccaacctgagggacgacatcatgcgcctggacgag
accgtgcatgtcgtcatcgccacgcccggccgcatcttggacttgataaaaaaaggcgtg
gcgaaggtggaccgggtccagatgatggtgatggacgaggcggacaagctgctctctcag
gacttcgtggttctcatcgaggacatcatcagcttcctggccaagaaccggcagatcctg
ctctactccgcaaccttccccatcagcgtccagaagttcatggtgaagcacctccagaaa
ccctacgagatcaacctgatggaggagctgaccctgaagggcatcacccagttctacgcc
tacgtgacggagcgccagaaggtccactgcctcaacacgctcttctccaggctgcagatc
aaccagtccatcatcttctgtaactccacccagcgggtggagctgctggccaagaagatc
acacagctgggatactcctgcttctacatccacgccaagatgatgcaggagtacaggaac
cgcgtgttccacgacttcaggaacgggttgtgcaggaacctggtctgcaccgatcttttc
accagaggaatcgacatccaggctgtgaacgtcgtcatcaactttgatttccctaaaaat
gcagaaacgtatctccatcgcatcgggaggtcagggcggttcggccacctgggtctggcc
atcaacctgatcacctcggaggatcgcttcaacctgaaggccatcgaggagcagctggtc
accgacatcaagcccatccccagcagcatcgacaagagcctctacgtggccgagtaccac
tccgggcccgtcaccgacggcgacgaggacgacgcggccgagaagccgccgcgccgccag
gacagcacctag
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