Poeciliopsis prolifica (blackstripe livebearer): 129376893
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Entry
129376893 CDS
T09758
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129376893 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129376893 (parn)
Enzymes [BR:
pprl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129376893 (parn)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129376893 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
129376893
NCBI-ProteinID:
XP_054912518
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MEVTRQNFKDCLSAVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLMFQFGLCTFRYDSGKSKYVTKPFNFYVFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFGHGIPYLNQDEEAQLREQTEERRNQHANGLGTPSFISPSSSKVPAHVPDEQKD
FINKVVEKVERLFNGNGKTLNLDPCTGFQRKLIYQTLSWKFPKGLHVETLETEKKERYIQ
ISKVEEEERKRREQQKLEKEQEELNNAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVAMCVFPRLLDTKLMASTQPFKELINNTSLGELEKQVKETPFKPPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFVSMANHLGSYLMPPMSYISPRSKLVEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYKIQTYADYIQGKQQEKEKLGQPAKTWRDDGWVKPHY
PSSTTSAGFGFPRRKRSISPTQGEQGGDDGISGDGWNHYSFPDSTGSKKIKYDDVGGQAS
VEAVESKTSEGWLKMTNSSYSAEPSPVADAKSPEGADSGSYADGTATWHQTPTVPGRKDQ
KSKKKSDASDSTTSLFEVPEVW
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacacgacaaaattttaaagactgcttaagcgcggtgtacagcgccatagag
gaggcggacttccttgctatcgatggagaattttcaggtataagcgacggtcctaatgtc
agtgcgttgaccaacgggctggatacacctgaagagagatacacgaagctgaaaaagcat
tccatggactttctcatgttccagtttggcttgtgtacattcagatacgactctgggaag
tcaaagtacgttacgaagccttttaacttttatgttttcccgaaaccattcagtcggacg
tctcccgatataaagttcatctgtcaaagttccagcattgacttcctggcgagccagggg
tttgacttcaacaaggtgtttggtcatggaatcccgtacctaaatcaagacgaggaagct
cagctgagagagcagacggaggaacggagaaaccagcacgctaacggtctcgggacgcct
tcctttatctccccgtcatcctccaaagtccctgcacacgtacccgacgaacagaaagac
ttcatcaacaaagtggtagagaaagttgagaggcttttcaatggaaatgggaaaactctg
aacttggacccatgtacaggattccagagaaagctgatataccagacactgagctggaag
tttcccaaaggtcttcatgttgaaacattggaaacagaaaagaaggagcgctacattcag
atcagtaaagttgaggaggaggagaggaagaggagagagcaacagaaactggagaaggag
caggaggagctcaataacgctgtgggcttctccagggtcatccacgccatttctaaatct
ggtaaactggtggttggccacaacatgcttctggatgtgatgcacaccatccaccagttc
tactgtccgctgccagaggaccttcaagacttcaaagaagttgcaatgtgtgttttccca
agacttctagacacaaagctgatggcctccactcagccatttaaggagctgatcaacaac
acatctctgggagagctggaaaaacaagtgaaagaaactccattcaagccaccgcaagtt
gaaaccgccgaggggttccccagctacgacacggctcaggagcagctccacgaggccgga
tacgacgcttacatcaccggcctgtgtttcgtctccatggccaaccacctgggttcttac
ctgatgccgccgatgtcttacatctcccccagatcgaaactagttgaacctttcttcaac
aagctctttctgatgcggattatcgacataccctacctcaatatcaccggaccagatttg
cagccgaagagagaccatgtcctttacgtgaccttccccaaggagtggaagacgagtgac
ctctaccagctcttcagtgcctttggtaacatccaggtgtcgtggatagatgacacctca
gccttcgtctctctaagtcagacagaccaggtgcagatcgctatgaacaccagccgctac
gcagagagctacaagatccagacgtacgcagactacatccaggggaaacagcaggagaag
gagaagctcggccagccagctaaaacctggcgggacgacggctgggtgaagccccactac
ccctcttccactacgtctgctgggtttgggttccccaggaggaaacgcagcatcagtccc
actcagggggagcagggaggcgacgatggcatcagcggggacggctggaaccactactca
ttcccagacagcactggcagcaaaaagatcaaatatgatgatgtcggcggccaggcgagc
gttgaagccgtggagagcaagacgtcagaaggctggctgaagatgacaaattcttcgtat
tcggccgaaccaagcccagtcgcagatgctaaaagtccagaaggcgccgactcgggcagc
tacgctgacgggacggccacctggcaccaaactccaacagttccaggaaggaaagatcaa
aaaagcaagaagaagtctgacgcgtcagattctacaacctccctgtttgaagtcccagaa
gtctggtag
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