Poeciliopsis prolifica (blackstripe livebearer): 129377370
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Entry
129377370 CDS
T09758
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04140
Autophagy - animal
pprl04142
Lysosome biogenesis
pprl04145
Phagocytosis
pprl04148
Efferocytosis
pprl05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
129377370 (vps39)
04142 Lysosome biogenesis
129377370 (vps39)
04140 Autophagy - animal
129377370 (vps39)
04148 Efferocytosis
129377370 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129377370 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprl04131
]
129377370 (vps39)
Membrane trafficking [BR:
pprl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
129377370 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
129377370
NCBI-ProteinID:
XP_054913245
LinkDB
All DBs
Position
Unknown
AA seq
970 aa
AA seq
DB search
MTATVFMGNTQVLLLSPEVMWKDPDDDEERPRMDVCSTFSGKNGGDVKSYKDILIGALEY
TGQHSGAARSAEPCSPEGPGSRPARNLQNVRSLHVTPCACAGFLRVLRFPPHSKTLQNED
WLLVGTKPGHLLLYRIKKDAATNRFEVTLEKSNKNFSKKIQQLYVVSQYKILVSLLENNI
HVHDLLTFQQITVVSKAKGTTLFACDLQQSSSGEESLRMCVAVKRKLQLYYWKDREFHEL
QGDLGVPDVPKSMAWCENSICVGFKRDYYLIRLDGRGSIKELFPTGKQLEPLVAPLADGK
VAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTLEPRLLVQ
NVELQRPRFITSAGPNIVYVASNHFVWRLVPVSIASQIQQLLQDKQFELALQLAKMKDDS
DGEKKQQIHHIQNLYAFNLFCQKKFDDSMQVFAKLGTDPTHVIGLYPDLLPSDYRKQLHY
PNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQLNDTGPSTTSPLMEGTPTIKSRKKLLQ
IIDTTLLKCYLHTNVALVSPLLRLENNHCHIEESEYVLKKSQKYSELIILYEKKGLHQKA
LQVLLDQSTKANSPLKGHERTVQYLQRLGSENLGIILEFSPWVLKICPEDGLKIFTEDLP
EVETLPRDKVLQFLKEGFVELAVPYLEHIIYVWDEKGPEFHNVLIQLYLSRVQGLMKQYL
NSLPEGVSAVPAGQEQGELGEFRNKLLTFLDISTSYESARLISDFPFDGLLEERALLLGR
MGKHEQALFIYVHVLNDTRMAEEYCHRHYNSSVEGNKDVYLSLLRMYLSPPDAHCLGPIK
MELTEPQANLQAALHVLELHHSKLNTTKAINLLPANTQIREIKVFLESVLEEKAQMKRCN
QVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTCRVCKKKIGNSAFARYPNGVVVHYFCC
KDRSVCPTEQ
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgacagctactgtattcatgggcaacacacaagtgctgttgttgtcaccggaagtcatg
tggaaagacccggatgatgacgaggaaagaccccggatggatgtttgttctacgttttca
ggaaagaatggcggtgacgtcaaaagctacaaagatatattaataggagccttggaatat
actgggcagcacagtggcgcagctcgtagcgctgagccttgcagtccggagggtccgggt
tcaagaccagctcggaaccttcagaatgtacggagtttgcatgttactccctgtgcttgc
gcgggtttcctccgggtactccggtttcccccgcactctaaaacattgcaaaacgaggat
tggctgcttgttggaacaaaaccaggacatcttctcctgtacagaatcaagaaggatgca
gccaccaaccggtttgaggtgactttggaaaagtctaataaaaacttctccaagaaaatt
caacagctgtatgtcgtctctcagtataaaattctcgtcagtcttttggagaacaacatc
cacgtccatgacctcctgaccttccagcagatcactgtggtgtctaaggccaaaggaacc
acgctgtttgcatgtgacctgcagcaatcgagctccggagaagagagcctcagaatgtgt
gtagcggtgaaaaggaaacttcagctgtattactggaaagatagagagttccatgagctg
cagggcgacttgggtgtgccagatgttcccaagtccatggcttggtgtgaaaactccatc
tgtgttggcttcaaacgggactattacctcattcggctggatggccgcggctccatcaag
gagctgttccccactgggaaacagttggagcctctcgttgccccgctggctgatgggaag
gtggctgttgggcaggacgacctcaccgtggtgcttaacgaagaaggagtttgcacccag
aagtgcgccctgaactggaccgatattcctatcgccatggagcaccagcctccctacatc
attgcggtcctcccgcggtacgtggagatacggaccttagaacctcggctgctggtgcag
aatgtggagctgcaaaggccgcgcttcatcacctcagcagggccaaacatcgtgtacgtc
gccagcaaccacttcgtctggcgcctggtgccggtgtcgatagccagccagatccagcag
cttctccaggacaagcagttcgagctcgctcttcagctggcgaaaatgaaggacgattca
gatggtgaaaagaagcagcagatacatcacatccagaatctttacgccttcaatctgttt
tgccagaagaagtttgatgactccatgcaggtgtttgcgaaacttggtacagatcccacg
catgtgatcggactttacccggacctgctcccttcagactaccgcaaacagctgcattac
cccaaccctctgcccagcttgtctggggccgaactggagaaagctcacctggctcttatt
gattacctcacccagaaacgtagtcatcttgtcaaacagctgaatgacaccggcccgtcc
acaacgtctccgctcatggaaggaacgccgactattaagagccgcaaaaaactcctgcag
atcatcgacaccacgctgctcaaatgttacctgcacaccaacgtggccctcgtctccccc
ctccttcgactggagaacaaccactgccacattgaggagagcgagtacgttctgaagaag
tctcagaagtacagcgagcttatcattctctacgaaaagaagggcttgcaccaaaaagcc
ttgcaggtcctgctggaccaatccaccaaggccaactctcctctgaaaggtcatgagcga
accgtccagtacctccaacgactgggatcagagaatctggggataatcttggagttttct
ccctgggtgcttaaaatctgtcctgaggacggcttgaaaatcttcactgaagatctgccc
gaggtggagactttgcccagagacaaagtgctgcagttcctgaaggaaggcttcgtggag
ctggccgtcccgtatttggagcacatcatttatgtgtgggacgagaagggccccgagttt
cacaatgtgcttattcagctgtatctgagcagggtacaaggcctgatgaagcagtacctc
aactcactgccagaaggggtttctgccgttcctgccggccaggagcaaggtgaactggga
gagttcaggaacaagctgctgacttttttggatatttccaccagctatgaatctgccaga
ctcatcagcgacttcccatttgatgggctgctggaggaacgggctctgctcctgggtcgc
atgggtaaacacgagcaggcgcttttcatatatgttcacgtcctgaacgacacccgcatg
gccgaagaatactgccaccggcattataacagttcagtggaaggaaacaaagatgtttat
ctgtccctgctgcgcatgtacctgtctccccctgacgcccactgcctggggcccattaag
atggagctcactgagcctcaggccaacctgcaggcagctctgcatgtcctggagctgcac
cacagcaagctcaacaccactaaggctatcaatctgctcccagcaaacactcagatccgg
gagattaaggtcttcctggagagcgtcctggaggagaaggcccaaatgaaacgctgcaac
caggtgttgaagagtctgctgcaggccgagttcctcagggtgcaggaagaacgaatcttc
caccagcaggttaaatgtgtcataacagaagaaaaaacctgcagagtctgtaagaagaag
ataggaaacagtgcgtttgccaggtatcccaacggcgtggtggttcactatttctgctgc
aaagatcgcagcgtgtgtcccactgagcagtaa
DBGET
integrated database retrieval system
