Poeciliopsis prolifica (blackstripe livebearer): 129378634
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Entry
129378634 CDS
T09758
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprl04040
]
129378634 (scn1lab)
Ion channels [BR:
pprl04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129378634 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
PFF1_TM
IQ
New_glue
Motif
Other DBs
NCBI-GeneID:
129378634
NCBI-ProteinID:
XP_054914975
LinkDB
All DBs
Position
Unknown
AA seq
2006 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRAERRSDDDDENGPRPNSDLEAGK
SLPLIYGDIPPGLVSTPLEDLDPFYSNQKTFIVLNRGKTIFRFNATSALYILNPFNPLRR
IAIKVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRVPNFSNASSSNSSITGNDTG
LFNTTLNWTEFISDESNYYHLPGRRDALLCGNGSGAGLCPEGFMCLKTGRNPDYGYTSFD
TFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAY
DEQNQATIEEAQQKEEEFQAMLDQLKRQQEEAQVAAAAATESAEYSGRGGPTSESSSGTS
KLSSKSAKERRNRRKKRKQREEEEERGMCDKFHKSMSEDSIKRSSFRFSIDANRLSYEKR
CSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFEENDSRRGSL
FVPRRLERRCSAVSQTSLGAPRIVLPANGKMHCSVDCNGVVSLVGGTPVTTSPVGLLLPE
GTTTDTEMKKRRSGFLQPYVKEDYLDEPGGRQRAMSVASILTNTMEELEESRQKCPPCWY
RFANTCLIWDCCPAWLKIKEFVSMVVMDPFVDLAITICIVLNTLFMAMEHYPMTDEFDTL
LSIGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSVLR
SFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKEC
VCKIADDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCIIVFMMVMVIG
NLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQVAVGRIQRGISYVKAKARQFLQSLCF
DGGKGSGLAEESKPLDDLQSNGKGICISNHTPLEITKDPSGVYMMEGNGKPGGLVVGVGG
DTTVKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEKLDVD
PQPLSSSEGSTVDIRPPGDGAESVELEPEESLDPEACFTEGCVSRFQCCQVSEEVGWFKS
WWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRRTIKTVLEYADKVFTYIF
ILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVATALGYSELSAIKTLRTLRALRP
LRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNTTTDE
LFPISVVNNKTECLNLVNNSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSR
NLEEQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQK
KYYNAMKKLGSKKPQKPIPRPTNAFQGFVFDCVTKQAFDIVIMILICLNMVTMMVETDDQ
TKEMDKILYWINLVFIVLFTGESALKMISLRHFYFTIGWNIFDFVVVILSIVGMFLSEVI
EKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYA
IFAMSNFAYVKRESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNKREPDCDSKI
EHPGNSYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDF
EMFYEVWERFDPDATQFVEYNKLSDFADALDPPLRIAKPNMIQLVAMDLPMVSGERIHCL
DILFAFTKRVLGEGGEMDMLRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIVIQRA
FRRYMIQQAMKKASALYKEQLKEGVRDPDKDVMVINKFNENSTSDKTDMTPSTASPPSYN
SVTKSDKDKYEKENREKENKGKDRKK
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctgcttgtaccgcccggaccagacagcttccgcccctttgtccccgagtcg
ctggcggccatcgagaggcgcatcgccgaggaggaggcccggcgaccccgggcggagcgc
cgcagcgacgacgacgatgaaaacgggcccaggcccaacagcgacctggaggcggggaag
tccctgcccctcatctacggggacatccctccaggcctggtgtcaacccctctggaggac
ctggaccccttctacagcaaccagaagaccttcatagtattgaatcgtgggaagacaatc
ttccgtttcaatgccacttctgccttgtacatcctaaaccccttcaaccctctgaggagg
atagctattaaagttttagtgcactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctgagtaaccccccagagtgggcaaagaatgtagagtac
acattcacagggatttacaccttcgagtccctaataaagatcctggccaggggcttttgt
gtggggaagttcaccttcctgcgggatccgtggaactggctggacttcagcgtcatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccctgaaaacaatttcagtcatcccaggcctgaagaccatcgttggcgct
ctgatccagtcggtgaagaagctgtcggacgtgatgatcctcaccgtgttctgcctcagc
gtcttcgctctgatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
gtgccgaacttcagcaacgccagcagcagcaactccagcatcacgggcaacgacacgggc
ctgttcaacaccacgctgaactggaccgagttcatcagcgatgagagtaattactatcac
ctccctggccgtagggatgctctgctctgtggaaacggcagcggcgccggactctgtcca
gagggctttatgtgtctgaaaacgggccgtaatccagactacggctacacaagcttcgac
accttcagctgggccttcctctccctcttccgactcatgacgcaggacttctgggaaaac
ctttaccagcagactttgcgcgccgcagggaagccctacatgatcttctttgtgctggtg
atcttcctgggctccttttacctcattaacctgatcctggctgtggtagccatggcttac
gacgaacagaaccaggccaccatcgaggaggctcagcagaaggaggaggagttccaagcc
atgctggaccagctgaaaaggcagcaggaggaggcgcaggttgccgcggcagcagccacg
gagagcgccgagtacagcgggagaggaggccccacctccgagtcctcctcggggacgtcc
aagctgagctcgaaaagcgccaaggagcgacgcaacaggcggaagaagaggaagcagcgc
gaggaggaggaggagaggggcatgtgcgacaagttccacaagtccatgtccgaggacagc
atcaagaggtccagcttccgcttctccatcgatgccaaccgcctctcttatgagaaacga
tgctcctcacccaaccagtctctcctcagcatccgcggttccctcttctcgccgcggagg
aacagccgcgccagcctcttcagcttccgtggccgagcccgcgacatgggctccgagaac
gacttcgccgacgacgagcacagcaccttcgaggagaacgacagtcgccgagggtccctg
ttcgtgccgcggcgcctggagcggcgctgcagcgccgtcagccagaccagcttgggcgcg
ccacggatcgtgctgcccgccaacggaaagatgcactgctccgtagactgcaacggcgtg
gtgtcgctggtcggtgggacacctgtaacaacttcccctgtaggtctcctgctgcctgag
ggaacaacaacagacactgagatgaagaagcgccgatcgggattcctccagccttatgtg
aaagaggactatttagatgaaccaggggggcgccagagagccatgagcgtggccagtatc
ctcaccaacaccatggaagagctggaggagtcgagacagaagtgcccaccctgctggtac
agattcgccaacacctgcctgatttgggactgttgtccggcctggcttaaaatcaaagag
tttgtcagcatggtggtcatggatccctttgtggatctagcgatcaccatctgcattgtc
ctcaacactcttttcatggccatggagcattatcccatgaccgacgagtttgacaccctc
ctttcaatcggaaacctagtgttcacagggatcttcacggcagaaatgtgtttcaagatc
atcgccctggatccctactattactttcaggagggctggaacatctttgatggcatcatt
gtcagtctcagtcttatggagcttggcttggctaatgtagaaggcctgtctgtgctcaga
tccttcagattgctgagggtcttcaagctagccaagtcgtggcccactctgaacatgctg
atcaagatcatcggtaactcggtgggcgctctgggcaacctgacgctggtgctggccatc
atcgtgttcatcttcgccgtggtgggcatgcagctgttcggcaagagctacaaggagtgc
gtgtgcaagattgcggacgactgcgagctgccgcgctggcacatgcacgacttcttccac
tccttcctcatcgtgttccgggtgctgtgcggggagtggatagagaccatgtgggactgc
atggaggtggcggggcagacgatgtgcatcatcgtcttcatgatggtcatggtgatcgga
aacctcgtggtcctaaaccttttcctggccctcctcctgagctcgttcagcgcagacaac
ctggcggccaccgacgacgacagcgagatgaacaacctccaggtcgccgtcggccgcatc
cagcggggcatctcctacgtcaaggccaaagcgcggcagttcctccagagcctctgcttc
gacggcggaaagggttccggcctggccgaagagagcaaacccctggacgacctgcaaagc
aacggaaaggggatctgcatttctaaccacacgccactggagatcaccaaagaccccagt
ggggtatacatgatggagggcaacgggaagccaggggggctggtggttggggtgggcgga
gacaccacggtcaagtacccaatggaagaatgcgactacatgtcctttatccacaacccc
agccttacggtgaccgtgcccatcgccgtgggcgagtcggactttgaaaacctgaacacg
gaggatttcagcagcgactcttctgacgtggagggcagcaaagagaagctcgacgtagat
ccccaacccctcagctcgtcagaggggagcacagtggatattcgaccccctggagacggg
gctgaatctgtggagctggagccagaggagtcgttggaccctgaggcctgctttacagaa
ggctgtgtgagcaggttccagtgctgccaggtcagcgaggaagtgggctggttcaagagc
tggtggacgctcaggaaaacctgctttatcatagtggagcacaactggtttgagtccttc
atcatcttcatgatccttctcagcagtggagcgctggcttttgaagacatttacattgag
cagcggcggaccatcaaaacagtgctggagtacgcagacaaggtcttcacttacatcttc
atcctggaaatgctgctgaagtgggtggcatatggcttcgttaagtacttcaccaacgca
tggtgctggcttgacttcctcattgtagatgtgtccttggtgagcctcgtcgcaaccgct
ctgggctactctgagctcagcgccatcaaaactctgaggacactacgagccctccggccc
ctgagggccctgtctcggtttgagggcatgagggttgtggtgaacgctctgcttggcgcc
atcccctccatcatgaacgtgctcttggtttgcctcatcttctggctgatcttcagcatc
atgggcgtcaacctctttgcggggaagtactaccactgcgtcaacaccaccacagacgag
ctcttccccatcagcgtcgtcaacaacaagacagagtgcctgaatttggtgaacaacagc
gcccgctggaagaacgtcaaaatcaactttgacaacgtcggagctggttatctggctctg
ctgcaagtggcgacatttaaaggttggatggacatcatgtatgctgctgtggactctaga
aatttggaggagcagcctgagtatgaagtgaacctgtacatgtacctctactttgtgatc
ttcatcatctttggctccttcttcactctaaatttgtttattggtgtcatcatcgacaac
ttcaaccagcagaaaaaaaagtttggaggtcaagatatattcatgacagaagaacagaag
aaatactacaatgccatgaagaagttgggatcaaagaagccacaaaagccgattcctcgg
ccgacgaatgcatttcaaggctttgtgtttgactgtgtcacaaagcaggcattcgacatt
gtaatcatgatcctcatctgccttaacatggtgacgatgatggtggagacggatgaccaa
acaaaggaaatggacaaaatcctttactggatcaacctggtttttattgtgctattcacc
ggggagagtgcactcaaaatgatttctctgcgacacttttacttcactattggctggaac
atatttgactttgtggtagtgattctttcaattgtaggtatgtttctatccgaagttatc
gagaagtactttgtatcccctacgttgttccgagtgatccgactcgcccggataggccgc
atcctccgccttataaaaggtgccaagggcatccggacgctcctctttgccttgatgatg
tcactccctgccttgttcaacatcggccttcttcttttcttggttatgtttatctatgct
atcttcgcaatgtccaactttgcatatgtcaaaagagagtcagggatcgacgacatgttc
aactttgagacctttgggaacagcatgatttgcttgttccagatcacaacatcagctggg
tgggacggcctgttggcgcccatcctgaacaaaagagagccagactgtgacagcaagata
gagcaccctgggaactcctacaaaggcaactgtggtaacccttcagtaggcatctttttc
ttcgtcagttacatcatcatttgctttctgattgtggtcaacatgtatatcgccgtcatc
ctggagaacttcagcgtggccaccgaggagagcgccgaacctctaagcgaggacgatttt
gagatgttctacgaagtgtgggagcgctttgatcctgatgccactcagtttgtggagtac
aacaagctctcggactttgcagatgccctcgatccaccgcttcgcattgccaaacccaac
atgatccagctcgtagccatggatctgccaatggtgagtggcgaacgcattcactgccta
gacatcttgttcgctttcaccaaacgagttttgggcgaaggtggggagatggacatgttg
cgtggacagatggaggagcgtttcatggcctccaacccctcgaaagtgtcctacgagcca
attaccacaaccttgcgccgcaagcaggaggaaatgtcggccatagttattcagagagct
ttccggcgctacatgatccaacaggccatgaaaaaggcctccgctctctacaaagagcag
ctaaaggaaggcgtccgtgacccagacaaagatgtgatggtcatcaacaagttcaacgag
aactccacctcagacaaaacagacatgactccgtctaccgcctccccaccctcctacaat
agcgtgacgaagtcggacaaggacaaatacgaaaaagaaaacagggaaaaggaaaacaaa
gggaaagacagaaaaaaatag
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integrated database retrieval system
